Literature DB >> 11738709

Prediction of many new exons and introns in Plasmodium falciparum chromosome 2.

R Huestis1, K Fischer.   

Abstract

The current prediction of genes in the Plasmodium falciparum genome database relies upon a limited number of specially developed computer algorithms. We have re-annotated the sequence of chromosome 2 of P. falciparum by a computer-assisted manual analysis, which is described here. Of 161 newly predicted introns, we have experimentally confirmed 98. We regard 110 introns from the previously published analyses as probable, we delete 3, change 26 and add 135. We recognise 214 genes in chromosome 2. We have predicted introns in 121 genes. The increased complexity of gene structure on chromosome 2 is likely to be mirrored by the entire genome.

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Year:  2001        PMID: 11738709     DOI: 10.1016/s0166-6851(01)00376-0

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  4 in total

1.  Characterisation of PfRON6, a Plasmodium falciparum rhoptry neck protein with a novel cysteine-rich domain.

Authors:  Nicholas I Proellocks; Lev M Kats; David A Sheffield; Eric Hanssen; Casilda G Black; Karena L Waller; Ross L Coppel
Journal:  Int J Parasitol       Date:  2008-11-27       Impact factor: 3.981

2.  cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome.

Authors:  Fangli Lu; Hongying Jiang; Jinhui Ding; Jianbing Mu; Jesus G Valenzuela; José M C Ribeiro; Xin-zhuan Su
Journal:  BMC Genomics       Date:  2007-07-27       Impact factor: 3.969

3.  PEST sequences in the malaria parasite Plasmodium falciparum: a genomic study.

Authors:  David Mitchell; Angus Bell
Journal:  Malar J       Date:  2003-06-23       Impact factor: 2.979

4.  Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs.

Authors:  Hiroyuki Wakaguri; Yutaka Suzuki; Masahide Sasaki; Sumio Sugano; Junichi Watanabe
Journal:  BMC Genomics       Date:  2009-07-15       Impact factor: 3.969

  4 in total

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