Literature DB >> 11738706

FLEXGene repository: from sequenced genomes to gene repositories for high-throughput functional biology and proteomics.

L Brizuela1, P Braun, J LaBaer.   

Abstract

The vast amount of information generated by the human genome sequencing project and related projects has given rise to a new paradigm in experimental biology. This new paradigm invokes the experimentation and data analysis at genome-wide scales, as well as the generation of new technologies and resources that take full advantage of the available sequence information. The Institute of Proteomics at Harvard Medical School is building a comprehensive, characterized, arrayed and flexible gene repository that will allow full exploitation of the genomic information by enabling functional genomics as well as protein expression, purification and analysis at genome wide scale. The FLEXGene repository (Full Length EXpression-ready) will contain clones representing the complete set of open reading frames (ORFs) of different organisms including H. sapiens and several pathogens and model organisms. The clones are constructed using recombination-based cloning technology so that hundreds or thousands of coding regions can be transferred into any expression vector in a parallel and timely mode, allowing the broadest variety of experiments to be carried out.

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Year:  2001        PMID: 11738706     DOI: 10.1016/s0166-6851(01)00366-8

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  12 in total

1.  The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline.

Authors:  Amanda G Paulovich; Jeffrey R Whiteaker; Andrew N Hoofnagle; Pei Wang
Journal:  Proteomics Clin Appl       Date:  2008-10-01       Impact factor: 3.494

2.  Selecting open reading frames from DNA.

Authors:  Paola Zacchi; Daniele Sblattero; Fiorella Florian; Roberto Marzari; Andrew R M Bradbury
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

3.  Proteome-scale purification of human proteins from bacteria.

Authors:  Pascal Braun; Yanhui Hu; Binghua Shen; Allison Halleck; Malvika Koundinya; Ed Harlow; Joshua LaBaer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

4.  Preparation of recombinant protein spotted arrays for proteome-wide identification of kinase targets.

Authors:  Hogune Im; Michael Snyder
Journal:  Curr Protoc Protein Sci       Date:  2013-04

5.  Production of Myxoma virus gateway entry and expression libraries and validation of viral protein expression.

Authors:  Sherin E Smallwood; Masmudur M Rahman; Steven J Werden; Maria Fernanda Martino; Grant McFadden
Journal:  Curr Protoc Microbiol       Date:  2011-05

6.  The Pseudomonas aeruginosa PA01 gene collection.

Authors:  Joshua Labaer; Qingqing Qiu; Anukanth Anumanthan; Wenhong Mar; Dongmei Zuo; T V S Murthy; Helen Taycher; Allison Halleck; Eugenie Hainsworth; Stephen Lory; Leonardo Brizuela
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

7.  Production and sequence validation of a complete full length ORF collection for the pathogenic bacterium Vibrio cholerae.

Authors:  Andreas Rolfs; Wagner R Montor; Sang Sun Yoon; Yanhui Hu; Bhupinder Bhullar; Fontina Kelley; Seamus McCarron; Daniel A Jepson; Binghua Shen; Elena Taycher; Stephanie E Mohr; Dongmei Zuo; Janice Williamson; John Mekalanos; Joshua Labaer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-12       Impact factor: 11.205

8.  PlasmID: a centralized repository for plasmid clone information and distribution.

Authors:  Dongmei Zuo; Stephanie E Mohr; Yanhui Hu; Elena Taycher; Andreas Rolfs; Jason Kramer; Janice Williamson; Joshua LaBaer
Journal:  Nucleic Acids Res       Date:  2006-11-28       Impact factor: 16.971

Review 9.  Protein microarray technology.

Authors:  David A Hall; Jason Ptacek; Michael Snyder
Journal:  Mech Ageing Dev       Date:  2006-11-28       Impact factor: 5.432

10.  Exploration of panviral proteome: high-throughput cloning and functional implications in virus-host interactions.

Authors:  Xiaobo Yu; Xiaofang Bian; Andrea Throop; Lusheng Song; Lerys Del Moral; Jin Park; Catherine Seiler; Michael Fiacco; Jason Steel; Preston Hunter; Justin Saul; Jie Wang; Ji Qiu; James M Pipas; Joshua LaBaer
Journal:  Theranostics       Date:  2014-06-06       Impact factor: 11.556

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