Literature DB >> 11738180

Computational protein design.

C M Kraemer-Pecore1, A M Wollacott, J R Desjarlais.   

Abstract

The field of computational protein design is reaching its adolescence. Protein design algorithms have been applied to design or engineer proteins that fold, fold faster, catalyze, catalyze faster, signal, and adopt preferred conformational states. Further developments of scoring functions, sampling strategies, and optimization methods will expand the range of applicability of computational protein design to larger and more varied systems, with greater incidence of success. Developments in this field are beginning to have significant impact on biotechnology and chemical biology.

Mesh:

Substances:

Year:  2001        PMID: 11738180     DOI: 10.1016/s1367-5931(01)00267-8

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  14 in total

1.  Combining computational and experimental screening for rapid optimization of protein properties.

Authors:  Robert J Hayes; Jorg Bentzien; Marie L Ary; Marian Y Hwang; Jonathan M Jacinto; Jöst Vielmetter; Anirban Kundu; Bassil I Dahiyat
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-21       Impact factor: 11.205

2.  A de novo redesign of the WW domain.

Authors:  Christina M Kraemer-Pecore; Juliette T J Lecomte; John R Desjarlais
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

3.  Computational protein design is a challenge for implicit solvation models.

Authors:  Alfonso Jaramillo; Shoshana J Wodak
Journal:  Biophys J       Date:  2004-09-17       Impact factor: 4.033

4.  Paradigms for computational nucleic acid design.

Authors:  Robert M Dirks; Milo Lin; Erik Winfree; Niles A Pierce
Journal:  Nucleic Acids Res       Date:  2004-02-27       Impact factor: 16.971

5.  One- and two-body decomposable Poisson-Boltzmann methods for protein design calculations.

Authors:  Shannon A Marshall; Christina L Vizcarra; Stephen L Mayo
Journal:  Protein Sci       Date:  2005-03-31       Impact factor: 6.725

6.  Computational thermostabilization of an enzyme.

Authors:  Aaron Korkegian; Margaret E Black; David Baker; Barry L Stoddard
Journal:  Science       Date:  2005-05-06       Impact factor: 47.728

7.  Genetic algorithms as a tool for helix design--computational and experimental studies on prion protein helix 1.

Authors:  Jan Ziegler; Stephan Schwarzinger
Journal:  J Comput Aided Mol Des       Date:  2006-03-16       Impact factor: 3.686

8.  Development of a cytokine analog with enhanced stability using computational ultrahigh throughput screening.

Authors:  Peizhi Luo; Robert J Hayes; Cheryl Chan; Diane M Stark; Marian Y Hwang; Jonathan M Jacinto; Padmaja Juvvadi; Helen S Chung; Anirban Kundu; Marie L Ary; Bassil I Dahiyat
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

9.  Computational design of receptors for an organophosphate surrogate of the nerve agent soman.

Authors:  Malin Allert; Shahir S Rizk; Loren L Looger; Homme W Hellinga
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

10.  Tradeoff between stability and multispecificity in the design of promiscuous proteins.

Authors:  Menachem Fromer; Julia M Shifman
Journal:  PLoS Comput Biol       Date:  2009-12-24       Impact factor: 4.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.