Literature DB >> 11735982

Chromatin: a tunable spring at work inside chromosomes.

E Ben-Haïm1, A Lesne, J M Victor.   

Abstract

This paper focuses on mechanical aspects of chromatin biological functioning. Within a basic geometric modeling of the chromatin assembly, we give a complete set of elastic constants (twist and bend persistence lengths, stretch modulus and twist-stretch coupling constant) of the so-called 30-nm chromatin fiber, in terms of DNA elastic properties and geometric properties of the fiber assembly. The computation naturally embeds the fiber within a current analytical model known as the "extensible wormlike rope," allowing a straightforward prediction of the force-extension curves. We show that these elastic constants are strongly sensitive to the linker length, up to 1 bp, or equivalently to its twist, and might locally reach very low values, yielding a highly flexible and extensible domain in the fiber. In particular, the twist-stretch coupling constant, reflecting the chirality of the chromatin fiber, exhibits steep variations, and sign changes when the linker length is varied. We argue that this tunable elasticity might be a key feature for chromatin function, for instance, in the initiation and regulation of transcription.

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Year:  2001        PMID: 11735982     DOI: 10.1103/PhysRevE.64.051921

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  28 in total

1.  Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.

Authors:  Olga I Kulaeva; Guohui Zheng; Yury S Polikanov; Andrew V Colasanti; Nicolas Clauvelin; Swagatam Mukhopadhyay; Anirvan M Sengupta; Vasily M Studitsky; Wilma K Olson
Journal:  J Biol Chem       Date:  2012-04-19       Impact factor: 5.157

2.  The effect of linker histone's nucleosome binding affinity on chromatin unfolding mechanisms.

Authors:  Rosana Collepardo-Guevara; Tamar Schlick
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

3.  Local geometry and elasticity in compact chromatin structure.

Authors:  Elena F Koslover; Colin J Fuller; Aaron F Straight; Andrew J Spakowitz
Journal:  Biophys J       Date:  2010-12-15       Impact factor: 4.033

4.  Chromatin fiber functional organization: some plausible models.

Authors:  A Lesne; J-M Victor
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-23       Impact factor: 1.890

5.  Flexible histone tails in a new mesoscopic oligonucleosome model.

Authors:  Gaurav Arya; Qing Zhang; Tamar Schlick
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

6.  Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model.

Authors:  Gaurav Arya; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

7.  Topological constraints on the possible structures of the 30 nm chromatin fibre.

Authors:  D Z Staynov; Y G Proykova
Journal:  Chromosoma       Date:  2007-10-13       Impact factor: 4.316

8.  Strain-dependent twist-stretch elasticity in chiral filaments.

Authors:  M Upmanyu; H L Wang; H Y Liang; R Mahajan
Journal:  J R Soc Interface       Date:  2008-03-06       Impact factor: 4.118

9.  Linker histones incorporation maintains chromatin fiber plasticity.

Authors:  Pierre Recouvreux; Christophe Lavelle; Maria Barbi; Natalia Conde E Silva; Eric Le Cam; Jean-Marc Victor; Jean-Louis Viovy
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

10.  A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments.

Authors:  Gaurav Arya; Tamar Schlick
Journal:  J Phys Chem A       Date:  2009-04-23       Impact factor: 2.781

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