Literature DB >> 11735970

Field theory for a reaction-diffusion model of quasispecies dynamics.

R Pastor-Satorras1, R V Solé.   

Abstract

RNA viruses are known to replicate with extremely high mutation rates. These rates are actually close to the so-called error threshold. This threshold is in fact a critical point beyond which genetic information is lost through a second-order phase transition, which has been dubbed as the "error catastrophe." Here we explore this phenomenon using a field theory approximation to the spatially extended Swetina-Schuster quasispecies model [J. Swetina and P. Schuster, Biophys. Chem. 16, 329 (1982)], a single-sharp-peak landscape. In analogy with standard absorbing-state phase transitions, we develop a reaction-diffusion model whose discrete rules mimic the Swetina-Schuster model. The field theory representation of the reaction-diffusion system is constructed. The proposed field theory belongs to the same universality class as a conserved reaction-diffusion model previously proposed [F. van Wijland et al., Physica A 251, 179 (1998)]. From the field theory, we obtain the full set of exponents that characterize the critical behavior at the error threshold. Our results present the error catastrophe from a different point of view and suggest that spatial degrees of freedom can modify several mean-field predictions previously considered, leading to the definition of characteristic exponents that could be experimentally measurable.

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Year:  2001        PMID: 11735970     DOI: 10.1103/PhysRevE.64.051909

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  Severe hindrance of viral infection propagation in spatially extended hosts.

Authors:  José A Capitán; José A Cuesta; Susanna C Manrubia; Jacobo Aguirre
Journal:  PLoS One       Date:  2011-08-23       Impact factor: 3.240

2.  Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations.

Authors:  Josep Sardanyés; Carles Simó; Regina Martínez; Ricard V Solé; Santiago F Elena
Journal:  Sci Rep       Date:  2014-04-09       Impact factor: 4.379

  2 in total

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