Literature DB >> 11735518

A C-H...O=C hydrogen bond? Intramolecular hydrogen bonding in a novel semirubin.

M T Huggins1, D A Lightner.   

Abstract

(4Z)-8-(5-Carboxypentyl)-9-butyl-2,3-diethyl-dipyrrin-1-one (1), a new analogue of xanthobilirubic acid, (4Z)-8-(carboxyethyl)-2,7,9-dimethyl-3-ethyl-dipyrrin-1-one, was synthesized in four steps from the known 2,3-diethyl-dipyrrin-1-one. Whereas xanthobilirubic acid (which is a model for one-half of bilirubin, the yellow pigment of jaundice) and its homologues with hexanoic and longer acid chains at C-8 engage only in intermolecular hydrogen bonding, 1 is found to engage in intramolecular hydrogen bonding. In CDCl(3) solution, dipyrrinone 1 adopts an anti-Z conformation, and its hexanoic acid COOH is hydrogen-bonded to the lactam H-N-C=O and to the pyrrole C(7)-H but not to the pyrrole NH. The latter constitutes an example of a hydrogen bond of the type C-H...O=C, weak and detected typically in crystals. Dipyrrinone 1 is found by vapor pressure osmometry to be monomeric in CHCl(3), but its methyl ester (2) tends toward being dimeric, like that of methyl xanthobilirubinate, which is dimeric.

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Year:  2001        PMID: 11735518     DOI: 10.1021/jo010525p

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  3 in total

1.  Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase.

Authors:  John R Horton; Gary Ratner; Nilesh K Banavali; Niu Huang; Yongseok Choi; Martin A Maier; Victor E Marquez; Alexander D MacKerell; Xiaodong Cheng
Journal:  Nucleic Acids Res       Date:  2004-07-23       Impact factor: 16.971

2.  Intramolecular Hydrogen Bonding and Linear Pentapyrrole Conformation.

Authors:  D Timothy Anstine; David A Lightner
Journal:  Monatsh Chem       Date:  2014-07-01       Impact factor: 1.451

3.  Hydrogen Bonding: HOC=O· · ·H-N vs. HOC=O· · ·H-C.

Authors:  Sanjeev K Dey; Suchitra Datta; David A Lightner
Journal:  Monatsh Chem       Date:  2014-10-01       Impact factor: 1.451

  3 in total

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