Literature DB >> 11731487

A gene expression screen in zebrafish embryogenesis.

T Kudoh1, M Tsang, N A Hukriede, X Chen, M Dedekian, C J Clarke, A Kiang, S Schultz, J A Epstein, R Toyama, I B Dawid.   

Abstract

A screen for developmentally regulated genes was conducted in the zebrafish, a system offering substantial advantages for the study of the molecular genetics of vertebrate embryogenesis. Clones from a normalized cDNA library from early somitogenesis stages were picked randomly and tested by high-throughput in situ hybridization for restricted expression in at least one of four stages of development. Among 2765 clones that were screened, a total of 347 genes with patterns judged to be restricted were selected. These clones were subjected to partial sequence analysis, allowing recognition of functional motifs in 163 among them. In addition, a portion of the clones were mapped with the aid of the LN54 radiation hybrid panel. The usefulness of the in situ hybridization screening approach is illustrated by describing several new markers for the characteristic structure in the fish embryo named the yolk syncytial layer, and for different regions of the developing brain.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11731487     DOI: 10.1101/gr.209601

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  87 in total

Review 1.  A high-content screening assay in transgenic zebrafish identifies two novel activators of fgf signaling.

Authors:  Manush Saydmohammed; Laura L Vollmer; Ezenwa Obi Onuoha; Andreas Vogt; Michael Tsang
Journal:  Birth Defects Res C Embryo Today       Date:  2011-09

2.  Profiling patterned transcripts in Drosophila embryos.

Authors:  Karl Simin; Anne Scuderi; James Reamey; Diane Dunn; Robert Weiss; James E Metherall; Anthea Letsou
Journal:  Genome Res       Date:  2002-07       Impact factor: 9.043

3.  Characterizing embryonic gene expression patterns in the mouse using nonredundant sequence-based selection.

Authors:  Rita Sousa-Nunes; Amer Ahmed Rana; Ross Kettleborough; Joshua M Brickman; Melanie Clements; Alistair Forrest; Sean Grimmond; Philip Avner; James C Smith; Sally L Dunwoodie; Rosa S P Beddington
Journal:  Genome Res       Date:  2003-11-12       Impact factor: 9.043

4.  High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization.

Authors:  Toshiyuki Yoshikawa; Yulan Piao; Jinhui Zhong; Ryo Matoba; Mark G Carter; Yuxia Wang; Ilya Goldberg; Minoru S H Ko
Journal:  Gene Expr Patterns       Date:  2005-12-01       Impact factor: 1.224

5.  Sef and Sprouty expression in the developing ocular lens: implications for regulating lens cell proliferation and differentiation.

Authors:  Jessica Boros; Peter Newitt; Qian Wang; John W McAvoy; Frank J Lovicu
Journal:  Semin Cell Dev Biol       Date:  2006-10-26       Impact factor: 7.727

6.  Global analysis of hematopoietic and vascular endothelial gene expression by tissue specific microarray profiling in zebrafish.

Authors:  Laurence Covassin; Julio D Amigo; Kana Suzuki; Viktor Teplyuk; Juerg Straubhaar; Nathan D Lawson
Journal:  Dev Biol       Date:  2006-08-10       Impact factor: 3.582

Review 7.  Cellular signaling by fibroblast growth factors (FGFs) and their receptors (FGFRs) in male reproduction.

Authors:  Leanne M Cotton; Moira K O'Bryan; Barry T Hinton
Journal:  Endocr Rev       Date:  2008-01-23       Impact factor: 19.871

8.  Differential roles of transcriptional mediator complex subunits Crsp34/Med27, Crsp150/Med14 and Trap100/Med24 during zebrafish retinal development.

Authors:  Katrin Dürr; Jochen Holzschuh; Alida Filippi; Anne-Kathrin Ettl; Soojin Ryu; Iain T Shepherd; Wolfgang Driever
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

9.  Isolation and expression analysis of foxj1 and foxj1.2 in zebrafish embryos.

Authors:  Emil Aamar; Igor B Dawid
Journal:  Int J Dev Biol       Date:  2008       Impact factor: 2.203

10.  Copy number variation analysis implicates the cell polarity gene glypican 5 as a human spina bifida candidate gene.

Authors:  Alexander G Bassuk; Lakshmi B Muthuswamy; Riley Boland; Tiffany L Smith; Alissa M Hulstrand; Hope Northrup; Matthew Hakeman; Jason M Dierdorff; Christina K Yung; Abby Long; Rachel B Brouillette; Kit Sing Au; Christina Gurnett; Douglas W Houston; Robert A Cornell; J Robert Manak
Journal:  Hum Mol Genet       Date:  2012-12-07       Impact factor: 6.150

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.