Literature DB >> 11731296

A novel fluorescent silica tracer for biological silicification studies.

K Shimizu1, Y Del Amo, M A Brzezinski, G D Stucky, D E Morse.   

Abstract

BACKGROUND: Biological silica production has drawn intense attention and several molecules involved in biosilicification have been identified. Cellular mechanisms, however, remain unknown mainly due to the lack of probes required for obtaining information on live specimens.
RESULTS: The fluorescence spectra of the compound 2-(4-pyridyl)-5-((4-(2-dimethylaminoethylaminocarbamoyl)methoxy)phenyl)oxazole (PDMPO) are affected by the presence of >3.2 mM silicic acid. Increase in intensity and shift in the fluorescence coincide with the polymerization of Si. The unique PDMPO-silica fluorescence is explored here to visualize Si deposition in living diatoms. The fluorophore is selectively incorporated and co-deposited with Si into the newly synthesized frustules (the outer silica shells) showing an intense green fluorescence.
CONCLUSIONS: We suggest that a fluorescence shift is due to an interaction between PDMPO and polymeric silicic acid. PDMPO is an excellent probe for imaging newly deposited silica in living cells and has also a potential for a wide range of applications in various Si-related disciplines, including biology of living organisms as diatoms, sponges, and higher plants, clinical research (e.g. lung fibrosis and cancer, bone development, artificial bone implantation), and chemistry and physics of materials research.

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Year:  2001        PMID: 11731296     DOI: 10.1016/s1074-5521(01)00072-2

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  29 in total

1.  Staining diatoms with rhodamine dyes: control of emission colour in photonic biocomposites.

Authors:  Melanie Kucki; Thomas Fuhrmann-Lieker
Journal:  J R Soc Interface       Date:  2011-08-24       Impact factor: 4.118

2.  Evidence for a regulatory role of diatom silicon transporters in cellular silicon responses.

Authors:  Roshan P Shrestha; Mark Hildebrand
Journal:  Eukaryot Cell       Date:  2014-11-07

3.  Sol-Generating Chemical Vapor into Liquid (SG-CViL) Deposition- A Facile Method for Encapsulation of Diverse Cell Types in Silica Matrices.

Authors:  Robert Johnston; Snezna Rogelj; Jason C Harper; Michaelann Tartis
Journal:  J Mater Chem B       Date:  2015-02-14       Impact factor: 6.331

4.  Biochemical Composition and Assembly of Biosilica-associated Insoluble Organic Matrices from the Diatom Thalassiosira pseudonana.

Authors:  Alexander Kotzsch; Damian Pawolski; Alexander Milentyev; Anna Shevchenko; André Scheffel; Nicole Poulsen; Andrej Shevchenko; Nils Kröger
Journal:  J Biol Chem       Date:  2015-12-28       Impact factor: 5.157

5.  Enniatin B1-induced lysosomal membrane permeabilization in mouse embryonic fibroblasts.

Authors:  Carlos A F Oliveira; Lada Ivanova; Anita Solhaug; Christiane K Fæste
Journal:  Mycotoxin Res       Date:  2019-07-01       Impact factor: 3.833

6.  Physiological and transcriptomic evidence for a close coupling between chloroplast ontogeny and cell cycle progression in the pennate diatom Seminavis robusta.

Authors:  Jeroen Gillard; Valerie Devos; Marie J J Huysman; Lieven De Veylder; Sofie D'Hondt; Cindy Martens; Pieter Vanormelingen; Katrijn Vannerum; Koen Sabbe; Victor A Chepurnov; Dirk Inzé; Marnik Vuylsteke; Wim Vyverman
Journal:  Plant Physiol       Date:  2008-09-26       Impact factor: 8.340

7.  Putative silicon transport vesicles in the cytoplasm of the diatom Synedra acus during surge uptake of silicon.

Authors:  Vadim V Annenkov; Tatjana N Basharina; Elena N Danilovtseva; Mikhail A Grachev
Journal:  Protoplasma       Date:  2013-03-24       Impact factor: 3.356

8.  Chitin in diatoms and its association with the cell wall.

Authors:  Colleen A Durkin; Thomas Mock; E Virginia Armbrust
Journal:  Eukaryot Cell       Date:  2009-05-08

9.  Quantifying diatom silicification with the fluorescent dye, PDMPO.

Authors:  Heather M McNair; Mark A Brzezinski; Jeffrey W Krause
Journal:  Limnol Oceanogr Methods       Date:  2015-06-18       Impact factor: 2.634

10.  Silica transport in the demosponge Suberites domuncula: fluorescence emission analysis using the PDMPO probe and cloning of a potential transporter.

Authors:  Heinz-C Schröder; Sanja Perović-Ottstadt; Matthias Rothenberger; Matthias Wiens; Heiko Schwertner; Renato Batel; Michael Korzhev; Isabel M Müller; Werner E G Müller
Journal:  Biochem J       Date:  2004-08-01       Impact factor: 3.857

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