Literature DB >> 11722945

Variation of microbial communities in soil, rhizosphere, and rhizoplane in response to crop species, soil type, and crop development.

G Wieland1, R Neumann, H Backhaus.   

Abstract

We investigated the influence of plant species, soil type, and plant development time on the shaping of microbial communities in soil and in association with roots. The sample group consisted of a total of 32 microcosms in three habitats: soil, rhizosphere, and rhizoplane. Communities were represented by the patterns of a sequence-specific separation of rRNA target sequences. Effects of experimental parameters were classified by a cluster analysis of pattern similarities. The type of plant species (clover, bean, or alfalfa) had the greatest effect in plant-associated habitats and also affected soil patterns. Plant development had a minor habitat-dependent effect that was partly obscured by replicate variation. The results stress the applicability of biased community representations in an analysis of induced variation.

Mesh：

Substances：

Year:  2001        PMID： 11722945      PMCID： PMC93382          DOI： 10.1128/AEM.67.12.5849-5854.2001

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  20 in total

1.  Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA.

Authors:  B M Duineveld; G A Kowalchuk; A Keijzer; J D van Elsas; J A van Veen
Journal:  Appl Environ Microbiol       Date:  2001-01       Impact factor: 4.792

2.  How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity.

Authors:  G E Fox; J D Wisotzkey; P Jurtshuk
Journal:  Int J Syst Bacteriol       Date:  1992-01

3.  Seasonal changes in the relative abundance of uncultivated sulfate-reducing bacteria in a salt marsh sediment and in the rhizosphere of Spartina alterniflora.

Authors:  J N Rooney-Varga; R Devereux; R S Evans; M E Hines
Journal:  Appl Environ Microbiol       Date:  1997-10       Impact factor: 4.792

4.  The composition of fluorescent pseudomonad populations associated with roots is influenced by plant and soil type.

Authors:  X Latour; T Corberand; G Laguerre; F Allard; P Lemanceau
Journal:  Appl Environ Microbiol       Date:  1996-07       Impact factor: 4.792

5.  Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis.

Authors:  M J Ferris; D M Ward
Journal:  Appl Environ Microbiol       Date:  1997-04       Impact factor: 4.792

6.  Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms.

Authors:  L K Poulsen; G Ballard; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1993-05       Impact factor: 4.792

7.  Improvement of fragment and primer selection for mutation detection by denaturing gradient gel electrophoresis.

Authors:  Y Wu; V M Hayes; J Osinga; I M Mulder; M W Looman; C H Buys; R M Hofstra
Journal:  Nucleic Acids Res       Date:  1998-12-01       Impact factor: 16.971

8.  Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments.

Authors:  A Teske; C Wawer; G Muyzer; N B Ramsing
Journal:  Appl Environ Microbiol       Date:  1996-04       Impact factor: 4.792

9.  Direct ribosome isolation from soil to extract bacterial rRNA for community analysis.

Authors:  A Felske; B Engelen; U Nübel; H Backhaus
Journal:  Appl Environ Microbiol       Date:  1996-11       Impact factor: 4.792

10.  Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis.

Authors:  U Nübel; B Engelen; A Felske; J Snaidr; A Wieshuber; R I Amann; W Ludwig; H Backhaus
Journal:  J Bacteriol       Date:  1996-10       Impact factor: 3.490
View more
  70 in total

1.  Effect of sulfadiazine-contaminated pig manure on the abundances of genes and transcripts involved in nitrogen transformation in the root-rhizosphere complexes of maize and clover.

Authors:  Julien Ollivier; Kristina Kleineidam; Rüdiger Reichel; Sören Thiele-Bruhn; Anja Kotzerke; Reimo Kindler; Berndt-Michael Wilke; Michael Schloter
Journal:  Appl Environ Microbiol       Date:  2010-10-22       Impact factor: 4.792

2.  Combining culture-dependent and -independent methodologies for estimation of richness of estuarine bacterioplankton consuming riverine dissolved organic matter.

Authors:  Veljo Kisand; Johan Wikner
Journal:  Appl Environ Microbiol       Date:  2003-06       Impact factor: 4.792

3.  Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils.

Authors:  Blaz Stres; Ivan Mahne; Gorazd Avgustin; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

4.  Effect of a Sinorhizobium meliloti strain with a modified putA gene on the rhizosphere microbial community of alfalfa.

Authors:  Pieter van Dillewijn; Pablo J Villadas; Nicolás Toro
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

5.  Multivariate analyses of Burkholderia species in soil: effect of crop and land use history.

Authors:  Joana Falcão Salles; Johannes Antonius van Veen; Jan Dirk van Elsas
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792

6.  Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling.

Authors:  Marek K Sliwinski; Robert M Goodman
Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

7.  Distinctive bacterial communities in the rhizoplane of four tropical tree species.

Authors:  Yoon Myung Oh; Mincheol Kim; Larisa Lee-Cruz; Ang Lai-Hoe; Rusea Go; N Ainuddin; Raha Abdul Rahim; Noraini Shukor; Jonathan M Adams
Journal:  Microb Ecol       Date:  2012-07-06       Impact factor: 4.552

8.  Impact of Bt corn on rhizospheric and soil eubacterial communities and on beneficial mycorrhizal symbiosis in experimental microcosms.

Authors:  M Castaldini; A Turrini; C Sbrana; A Benedetti; M Marchionni; S Mocali; A Fabiani; S Landi; F Santomassimo; B Pietrangeli; M P Nuti; N Miclaus; M Giovannetti
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

9.  Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques.

Authors:  Naoise Nunan; Timothy J Daniell; Brajesh K Singh; Artemis Papert; James W McNicol; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

10.  Competing factors of compost concentration and proximity to root affect the distribution of streptomycetes.

Authors:  Ehud Inbar; Stefan J Green; Yitzhak Hadar; Dror Minz
Journal:  Microb Ecol       Date:  2005-07-29       Impact factor: 4.552
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.