| Literature DB >> 11714393 |
M P Vincenti1, C E Brinckerhoff.
Abstract
Recent work has established that IL-1beta plays a central role in the inflammation and connective tissue destruction observed in both rheumatoid arthritis and osteoarthritis. These processes result from the ability of this inflammatory cytokine to activate expression of genes for neutral proteases, such as the matrix metalloproteinases. While IL-1beta activates matrix metalloproteinase genes within several hours, it also activates immediate early genes, which are required for the later expression of matrix metalloproteinases and other arthritis-perpetuating genes, are also activated. To identify putative immediate early genes involved in IL-1beta-mediated arthritic disease, a chondrocytic cell line (SW1353) was stimulated with this cytokine for 2 hours, total RNA was isolated, and expressed genes were identified by microarray analysis. This analysis identified alterations in the expression of multiple transcription factors, cytokines, growth factors and their receptors, adhesion molecules, proteases, and signaling intermediates that may contribute to inflammation and cartilage destruction in arthritis. Interestingly, confirmation of the expression of activating protein-1 family members by reverse transcriptase polymerase chain reaction revealed a preferential increase in junB, a known transcriptional antagonist of c-jun. The failure to observe induction of early growth response gene-1, which was detected by reverse transcriptase polymerase chain reaction to be substantially and transiently induced by 1 hour of IL-1 treatment, may be explained by the known instability of the message after early induction. However, this analysis has identified numerous IL-1beta-responsive genes that warrant further investigation as mediators of disease in arthritis.Entities:
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Year: 2001 PMID: 11714393 PMCID: PMC64850 DOI: 10.1186/ar331
Source DB: PubMed Journal: Arthritis Res ISSN: 1465-9905
PCR primers and conditions
| Annealing | Product | ||||
| Gene | Primers | temperature | Cycles | length* | |
| MMP-13 | CCAGTGGTGGTGATGAAGATG | Sense | 52°C | 25 | 143 |
| TTCTCGGAGCCTCTCAGTC | Antisense | ||||
| c-Jun | GGAAACGACCTTCTATGACGATGCCCTCAA | Sense | 63°C | 22 | 316 |
| GAACCCCTCCTGCTCATCTGTCACGTTCTT | Antisense | ||||
| JunD | GAGTGTTCGATTCTGCCCTA | Sense | 53°C | 22 | 214 |
| TGTGGACTCGTAGCAAAACA | Antisense | ||||
| JunB | CCAGTCCTTCCACCTCGACGTTTACAAG | Sense | 58°C | 22 | 257 |
| GACTAAGTGCGTGTTTCTTTTCCACAGTAC | Antisense | ||||
| egr-1 | TCCCGGCTCCTCGACCTAC | Sense | 60°C | 25 | 177 |
| AAGGTTGCTGTCATGTCCGAAAG | Antisense |
GAPDH was amplified using Clontech's human GPDH amplimer set with an annealing temperature of 58°C and 25 cycles of amplification. MMP-13 = matrix metalloproteinase-13; egr-1 = early growth response gene-1. *Measured in base pairs.
IL-1-responsive genes in chondrocytic cells
| Fold | Fold | ||
| ↑ | ↓ | Gene description | Genbank# |
| 18.0 | I-rel (RELB) | M83221 | |
| 17.0 | nuclear factor NF-kappa-B p100 subunit; nuclear factor NF-kappa-B p52 subunit; H2TF1; oncogene lyt-10 | X61498 | |
| 15.7 | interferon regulatory factor 1 (IRF1) | X14454 | |
| 13.7 | major histocompatibility complex enhancer-binding protein MAD3 | M69043 | |
| 8.1 | nuclear factor kappa-B DNA binding subunit (NF-kappaB; NFKB) | M58603 | |
| 5.5 | octamer-binding transcription factor 2 (oct-2; OTF2); lymphoid-restricted immunoglobulin octamer | M36542 | |
| binding protein NF-A2; POU2F2 | |||
| 4.7 | IkappaB epsilon (IKBE) | U91616 | |
| 3.0 | c-rel proto-oncogene protein | X75042 | |
| 2.8 | fos-related antigen (FRA1) | X16707 | |
| 2.4 | STAT-induced STAT inhibitor 3 | AB004904 | |
| 2.4 | erythroblastosis virus oncogene homolog 1 (ETS-1); p54 | J04101 | |
| 2.3 | jun-B | M29039 | |
| 2.2 | ELAV-like neuronal protein 1 (HEL-N1) + HEL-N2 | U12431 + | |
| U29943 | |||
| 2.0 | myb proto-oncogene; c-myb | M15024 | |
| 2.0 | NF-kappaB transcription factor p65 subunit; RELA; NFKB3 | L19067 | |
| 2.0 | transcription factor erf-1; AP2 gamma transcription factor | U85658 | |
| 2.0 | early growth response alpha (EGR alpha) | S81439 | |
| 6.0 | homeobox protein HOX-D3; HOX-4A | D11117 | |
| 2.0 | retinoblastoma-like protein 2 (RBL2; RB2); 130-kDa retinoblastoma-associated protein | X74594 | |
| 2.0 | mothers against dpp homolog 4 (SMAD4); MADR4; pancreatic carcinoma gene 4 (DPC4) | U44378 | |
| 21 | leukemia inhibitory factor precursor (LIF); differentiation-stimulating factor (D factor); melanoma-derived | X13967; | |
| LPL inhibitor (MLPLI); HILDA | M63420 | ||
| 8.7 | interleukin-11 (IL-11); adipogenesis inhibitory factor (AGIF) | M57765 | |
| 6.1 | interferon-gamma (IFN-gamma) receptor beta subunit precursor; IFN-gamma accessory factor 1 (AF1); | U05875 | |
| IFN-gamma transducer 1 (IFNGT1) | |||
| 6.1 | interleukin-6 precursor (IL-6); B-cell stimulatory factor 2 (BSF2); interferon beta-2 (IFNB2); | X04602; | |
| hybridoma growth factor | M14584 | ||
| 5.9 | heparin-binding EGF-like growth factor (HBEGF); diphtheria toxin receptor (DTR) | M60278 | |
| 5.0 | interferon gamma-induced protein precursor (gamma-IP10) | X02530 | |
| 4.3 | putative serine/threonine protein kinase PRK | U56998 | |
| 4.3 | CD40 receptor-associated factor 1 (CRAF1) | U21092 | |
| 3.6 | platelet-derived growth factor A subunit precursor (PDGFA; PDGF1) | X06374 | |
| 3.0 | bone morphogenetic protein 3B precursor (BMP3B); growth differentiation factor 10 (GDF10); | D49493 | |
| bone inducing protein (BIP) | |||
| 2.5 | CD40 ligand (CD40-L); tumor necrosis factor (TNF)-related activation protein (TRAP); T-cell antigen GP39 | L07414 | |
| 2.1 | interleukin-12 beta subunit precursor (IL-12B); cytotoxic lymphocyte maturation factor 40-kDa subunit | M65290 | |
| (CLMF p40); NK cell stimulatory factor subunit 2 (NKSF2) | |||
| 2.1 | glial growth factor 2 precursor (GGFHPP2); neuregulin; heregulin-beta3 + neu differentiation factor + | L12260; | |
| heregulin-alpha | L12261 + | ||
| U02326 + | |||
| M94165 | |||
| 2.0 | platelet-derived growth factor B subunit precursor (PDGFB; PDGF2); bacaplermin; c-sis | X02811; | |
| X02744; | |||
| M12783; | |||
| M16288 | |||
| 7.8 | bone morphogenetic protein 4 (BMP4) + bone morphogenetic protein 2B (BMP2B) | D30751 + | |
| M22490 | |||
| 2.3 | platelet-derived growth factor receptor alpha subunit (PDGFRA); CD140A antigen | M21574 | |
| 2.3 | platelet-derived growth factor receptor beta subunit (PDGFRB); CD140B antigen | M21616 | |
| 3.0 | matrix metalloproteinase 13 (MMP-13); collagenase 3 precursor | X75308 | |
| 2.3 | matrix metalloproteinase 7 (MMP-7); matrilysin | X07819 | |
| 2.1 | matrix metalloproteinase 12 (MMP-12); metalloelastase | L23808 | |
| 2.1 | collagen 6 alpha 2 subunit (COL6A2) | M34570 | |
| 2.1 | tissue-type plasminogen activator precursor (T-plasminogen activator; TPA) | M15518; | |
| X07393; | |||
| M18182 | |||
| 2.0 | urokinase-type plasminogen activator receptor GPI-anchored form precursor (U-PAR); monocyte activation | U08839; | |
| antigen MO3; CD87 antigen | M83246; | ||
| X51675 | |||
| 3.0 | chymotrypsin-like protease CTRL-1 precursor | X71874 | |
| 2.0 | cysteine protease | D55696 | |
| 3.5 | ninjurin-1 | U72661 | |
| 3.0 | desmocollin 3A/3B precursor (DSC3) + desmocollin 4 (DSC4) | X83929 + | |
| D17427 | |||
| 2.8 | tenascin precursor (TN); hexabrachion (HXB); cytotactin; neuronectin; GMEM; miotendinous antigen; | X78565; | |
| glioma-associated extracellular matrix antigen | M55618 | ||
| 2.2 | alpha-catenin related protein (CAPR); alpha 2 catenin (CTNNA2); alpha N-catenin | M94151 | |
| 4.0 | opioid-binding protein/cell adhesion molecule precursor (OBCAM); opioid-binding cell adhesion | L34774 | |
| molecule (OPCML) | |||
| 3.0 | integrin beta 4 (ITGB4); CD104 antigen | X53587; | |
| X52186; | |||
| X51841 | |||
| 2.2 | integrin alpha 1 (ITGA1); laminin & collagen receptor; VLA1; CD49A antigen | X68742 | |
| 7.0 | rho6 protein | Y07923 | |
| 2.9 | Gem; induced immediate early protein; ras family member (ras-like protein KIR) | U10550 | |
| 2.6 | regulator of G protein signaling 3 (RGS3; RGP3) | U27655 | |
| 2.5 | dual-specificity protein phosphatase 8; HVH5 | U27193 | |
| 2.3 | death receptor 5 (DR5); cytotoxic TRAIL receptor 2 (TRICK2A) | AF016268 | |
| 2.1 | protein kinase DYRK3 | Y12735 | |
| 2.1 | jagged 1 (HJ1) | AF028593 | |
| 6.0 | C-fgr proto-oncogene (p55-FGR); SRC2 | M19722 | |
| 4.0 | rho7 protein | X95456 | |
| 3.0 | GTP-binding protein ras associated with diabetes (RAD1) | L24564 | |
| 2.7 | rho-associated coiled-coil containing protein kinase p160ROCK | U43195 | |
| 2.5 | frizzled | L37882 | |
| 2.3 | cyclin-dependent kinase 4 inhibitor D (CDKN2D); p19-INK4D | U40343; | |
| U20498 | |||
| 2.3 | phosphotyrosyl phosphatase activator | X73478 | |
| 2.3 | protein kinase C-binding protein RACK7 | U48251 | |
| 2.2 | A-raf proto-oncogene serine/threonine-protein kinase; PKS2 | L24038 | |
| 2.2 | STE20-like kinase; MST2 | U26424 | |
| 2.1 | phosphorylase B kinase beta regulatory subunit | X84908 | |
| 2.0 | protein phosphatase 2A B56-alpha | L42373 | |
| 11.0 | melanoma differentiation-associated protein 7 precursor (MDA7) | U16261 | |
| 2.3 | tumor suppressor protein DCC precursor; colorectal cancer suppressor | X76132 |
Figure 1Early gene expression in IL-1-treated SW1353 chondrocytes. SW1353 cells were stimulated for the indicated times with IL-1β (10 ng/ml) and total RNA was isolated. RNA was treated with DNAse I and then reverse transcribed with Moloney murine leukemia virus reverse transcriptase and oligodT primers. A tenth of the reverse transcriptase reaction was amplified using gene-specific primers, Platinum Taq DNA polymerase, and 33PdATP. Single-band products were resolved on native acrylamide gels and visualized by autoradiography.