Literature DB >> 11697993

Proton inventory of the genomic HDV ribozyme in Mg(2+)-containing solutions.

S Nakano1, P C Bevilacqua.   

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Year:  2001        PMID： 11697993     DOI： 10.1021/ja0166850

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  16 in total

1.  Quantum Mechanical/Molecular Mechanical Study of the HDV Ribozyme: Impact of the Catalytic Metal Ion on the Mechanism.

Authors:  Abir Ganguly; Philip C Bevilacqua; Sharon Hammes-Schiffer
Journal:  J Phys Chem Lett       Date:  2011-11-17       Impact factor: 6.475

2.  Ribozyme-based gene-inactivation systems require a fine comprehension of their substrate specificities; the case of delta ribozyme.

Authors:  Lucien Junior Bergeron; Jonathan Ouellet; Jean-Pierre Perreault
Journal:  Curr Med Chem       Date:  2003-12       Impact factor: 4.530

Review 3.  Two distinct catalytic strategies in the hepatitis δ virus ribozyme cleavage reaction.

Authors:  Barbara L Golden
Journal:  Biochemistry       Date:  2011-10-17       Impact factor: 3.162

4.  Chemical rescue, multiple ionizable groups, and general acid-base catalysis in the HDV genomic ribozyme.

Authors:  Anne T Perrotta; Timothy S Wadkins; Michael D Been
Journal:  RNA       Date:  2006-05-11       Impact factor: 4.942

5.  Extraordinary rates of transition metal ion-mediated ribozyme catalysis.

Authors:  Manami Roychowdhury-Saha; Donald H Burke
Journal:  RNA       Date:  2006-08-15       Impact factor: 4.942

6.  Thio effects and an unconventional metal ion rescue in the genomic hepatitis delta virus ribozyme.

Authors:  Pallavi Thaplyal; Abir Ganguly; Barbara L Golden; Sharon Hammes-Schiffer; Philip C Bevilacqua
Journal:  Biochemistry       Date:  2013-09-03       Impact factor: 3.162

7.  A Two-Metal-Ion-Mediated Conformational Switching Pathway for HDV Ribozyme Activation.

Authors:  Tai-Sung Lee; Brian K Radak; Michael E Harris; Darrin M York
Journal:  ACS Catal       Date:  2016-02-01       Impact factor: 13.084

8.  Wobble pairs of the HDV ribozyme play specific roles in stabilization of active site dynamics.

Authors:  Kamali N Sripathi; Pavel Banáš; Kamila Réblová; Jiří Šponer; Michal Otyepka; Nils G Walter
Journal:  Phys Chem Chem Phys       Date:  2015-02-28       Impact factor: 3.676

9.  Metal binding motif in the active site of the HDV ribozyme binds divalent and monovalent ions.

Authors:  Narayanan Veeraraghavan; Abir Ganguly; Jui-Hui Chen; Philip C Bevilacqua; Sharon Hammes-Schiffer; Barbara L Golden
Journal:  Biochemistry       Date:  2011-03-09       Impact factor: 3.162

10.  Mechanistic strategies in the HDV ribozyme: chelated and diffuse metal ion interactions and active site protonation.

Authors:  Narayanan Veeraraghavan; Abir Ganguly; Barbara L Golden; Philip C Bevilacqua; Sharon Hammes-Schiffer
Journal:  J Phys Chem B       Date:  2011-06-07       Impact factor: 2.991
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