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Literature DB >> 11697221

The BioTools Suite. A comprehensive suite of platform-independent bioinformatics tools.

Abstract

The BioTools Suite is a set of three comprehensive, platform-independent software packages (PepTool, GeneTool, and ChromaTool) developed for sequence assembly and analysis. In addition to supporting a large number of standard bioinformatics functions, these programs also incorporate a number of useful innovations including uniform graphical-user interface (GUI) design, direct internet connectivity, a novel approach to feature annotation, and a variety of enhanced algorithms for large scale proteome and genome analysis. This article describes the key features, recent changes, and general operation of all three programs.

Mesh：

Year: 2001 PMID： 11697221 DOI： 10.1385/MB:19:1:059

Source DB: PubMed Journal: Mol Biotechnol ISSN： 1073-6085 Impact factor: 2.695

15 in total

1. Codon usage tabulated from international DNA sequence databases: status for the year 2000.

Authors: Y Nakamura; T Gojobori; T Ikemura
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. DNA analysis: new kid on the block.

Authors: D Nishimura
Journal: Science Date: 1999-07-16 Impact factor: 47.728

3. PepTool and GeneTool: platform-independent tools for biological sequence analysis.

Authors: D S Wishart; P Stothard; G H Van Domselaar
Journal: Methods Mol Biol Date: 2000

4. Protein structure at your desk.

Authors: B Basham
Journal: Science Date: 1999-02-19 Impact factor: 47.728

5. Prediction of genetic structure in eukaryotic DNA using reference point logistic regression and sequence alignment.

Authors: P M Hooper; H Zhang; D S Wishart
Journal: Bioinformatics Date: 2000-05 Impact factor: 6.937

Review 6. Empirical predictions of protein conformation.

Authors: P Y Chou; G D Fasman
Journal: Annu Rev Biochem Date: 1978 Impact factor: 23.643

7. Prediction of complete gene structures in human genomic DNA.

Authors: C Burge; S Karlin
Journal: J Mol Biol Date: 1997-04-25 Impact factor: 5.469

8. Constrained multiple sequence alignment using XALIGN.

Authors: D S Wishart; R F Boyko; B D Sykes
Journal: Comput Appl Biosci Date: 1994-12

9. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins.

Authors: J Garnier; D J Osguthorpe; B Robson
Journal: J Mol Biol Date: 1978-03-25 Impact factor: 5.469

10. A platform-independent graphical user interface for SEQSEE and XALIGN.

Authors: D S Wishart; S Fortin; D R Woloschuk; W Wong; T Rosborough; G Van Domselaar; J Schaeffer; D Szafron
Journal: Comput Appl Biosci Date: 1997-10

4 in total

1. The crystal structure of full-length Sizzled from Xenopus laevis yields insights into Wnt-antagonistic function of secreted Frizzled-related proteins.

Authors: Qixin Bu; Zhiqiang Li; Junying Zhang; Fei Xu; Jianmei Liu; Heli Liu
Journal: J Biol Chem Date: 2017-08-14 Impact factor: 5.157

2. Most Used Codons per Amino Acid and per Genome in the Code of Man Compared to Other Organisms According to the Rotating Circular Genetic Code.

Authors: Fernando Castro-Chavez
Journal: Neuroquantology Date: 2011-12

3. Single nucleotide polymorphisms identification in expressed genes of Schistosoma mansoni.

Authors: Mariana Simões; Diana Bahia; Adhemar Zerlotini; Kleider Torres; François Artiguenave; Goran Neshich; Paula Kuser; Guilherme Oliveira
Journal: Mol Biochem Parasitol Date: 2007-04-13 Impact factor: 1.759

4. Characterization of the NADP malic enzyme gene family in the facultative, single-cell C4 monocot Hydrilla verticillata.

Authors: Gonzalo M Estavillo; Srinath K Rao; Julia B Reiskind; George Bowes
Journal: Photosynth Res Date: 2007-07-19 Impact factor: 3.429

4 in total