Literature DB >> 11690649

Predicting protein conformation by statistical methods.

I Simon1, A Fiser, G E Tusnády.   

Abstract

The unique folded structure makes a polypeptide a functional protein. The number of known sequences is about a hundred times larger than the number of known structures and the gap is increasing rapidly. The primary goal of all structure prediction methods is to obtain structure-related information on proteins, whose structures have not been determined experimentally. Besides this goal, the development of accurate prediction methods helps to reveal principles of protein folding. Here we present a brief survey of protein structure predictions based on statistical analyses of known sequence and structure data. We discuss the background of these methods and attempt to elucidate principles, which govern structure formation of soluble and membrane proteins.

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Year:  2001        PMID: 11690649     DOI: 10.1016/s0167-4838(01)00253-9

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  5 in total

1.  Servers for sequence-structure relationship analysis and prediction.

Authors:  Zsuzsanna Dosztányi; Csaba Magyar; Gábor E Tusnády; Miklós Cserzo; András Fiser; István Simon
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Predicting transmembrane beta-barrels in proteomes.

Authors:  Henry R Bigelow; Donald S Petrey; Jinfeng Liu; Dariusz Przybylski; Burkhard Rost
Journal:  Nucleic Acids Res       Date:  2004-05-11       Impact factor: 16.971

3.  Modeling the transmembrane arrangement of the uncoupling protein UCP1 and topological considerations of the nucleotide-binding site.

Authors:  Amalia Ledesma; Mario García de Lacoba; Ignacio Arechaga; Eduardo Rial
Journal:  J Bioenerg Biomembr       Date:  2002-12       Impact factor: 2.945

4.  Residual backbone and side-chain 13C and 15N resonance assignments of the intrinsic transmembrane light-harvesting 2 protein complex by solid-state Magic Angle Spinning NMR spectroscopy.

Authors:  A J van Gammeren; F B Hulsbergen; J G Hollander; H J M de Groot
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

5.  Probing the Effect of Two Heterozygous Mutations in Codon 723 of SLC26A4 on Deafness Phenotype Based on Molecular Dynamics Simulations.

Authors:  Jun Yao; Xuli Qian; Jingxiao Bao; Qinjun Wei; Yajie Lu; Heng Zheng; Xin Cao; Guangqian Xing
Journal:  Sci Rep       Date:  2015-06-02       Impact factor: 4.379

  5 in total

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