Literature DB >> 11690459

How many conformations can a protein remember?

T M Fink1, R C Ball.   

Abstract

We show that a protein can be trained to recognize multiple conformations, analogous to an associative memory, and provide capacity calculations based on energy fluctuations and information theory. Unlike the linear capacity of a Hopfield network, the number of conformations which can be remembered by a protein sequence depends on the size of the amino acid alphabet as lnA, independent of protein length. This admits the possibility of certain proteins, such as prions, evolving to fold to independent stable conformations, as well as novel possibilities for protein and heteropolymer design.

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Year:  2001        PMID: 11690459     DOI: 10.1103/PhysRevLett.87.198103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  5 in total

1.  Guiding the folding pathway of DNA origami.

Authors:  Katherine E Dunn; Frits Dannenberg; Thomas E Ouldridge; Marta Kwiatkowska; Andrew J Turberfield; Jonathan Bath
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

2.  Computing spatial information from Fourier coefficient distributions.

Authors:  William F Heinz; Jeffrey L Werbin; Eaton Lattman; Jan H Hoh
Journal:  J Membr Biol       Date:  2011-05-05       Impact factor: 1.843

3.  Multifarious assembly mixtures: systems allowing retrieval of diverse stored structures.

Authors:  Arvind Murugan; Zorana Zeravcic; Michael P Brenner; Stanislas Leibler
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-22       Impact factor: 11.205

4.  Self-assembly of emulsion droplets through programmable folding.

Authors:  Angus McMullen; Maitane Muñoz Basagoiti; Zorana Zeravcic; Jasna Brujic
Journal:  Nature       Date:  2022-09-28       Impact factor: 69.504

5.  A hypothesis for bacteriophage DNA packaging motors.

Authors:  Philip Serwer
Journal:  Viruses       Date:  2010-08-26       Impact factor: 5.818

  5 in total

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