Literature DB >> 11682313

Gene and genome duplication.

D Sankoff1.   

Abstract

Genomic sequencing projects have revealed the productivity of processes duplicating genes or entire chromosome segments. Substantial proportions of the yeast, Arabidopsis and human gene complements are made up of duplicates. This has prompted much interest in the processes of duplication, functional divergence and loss of genes, has renewed the debate on whether an early vertebrate genome was tetraploid, and has inspired mathematical models and algorithms in computational biology.

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Year:  2001        PMID: 11682313     DOI: 10.1016/s0959-437x(00)00253-7

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  31 in total

1.  A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.

Authors:  Guillaume Blanc; Karsten Hokamp; Kenneth H Wolfe
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

2.  Excess non-synonymous substitutions suggest that positive selection episodes occurred during the evolution of DNA-binding domains in the Arabidopsis R2R3-MYB gene family.

Authors:  Li Jia; Michael T Clegg; Tao Jiang
Journal:  Plant Mol Biol       Date:  2003-06       Impact factor: 4.076

3.  Expansion and contraction of the DUP240 multigene family in Saccharomyces cerevisiae populations.

Authors:  Véronique Leh-Louis; Bénédicte Wirth; Serge Potier; Jean-Luc Souciet; Laurence Despons
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

4.  Identification of candidate disease genes by EST alignments, synteny, and expression and verification of Ensembl genes on rat chromosome 1q43-54.

Authors:  Ursula Vitt; Darryl Gietzen; Kristian Stevens; Jim Wingrove; Shanya Becha; Sean Bulloch; John Burrill; Narinder Chawla; Jennifer Chien; Matthew Crawford; Craig Ison; Liam Kearney; Mary Kwong; Joe Park; Jennifer Policky; Mark Weiler; Renee White; Yuming Xu; Sue Daniels; Howard Jacob; Michael I Jensen-Seaman; Jozef Lazar; Laura Stuve; Jeanette Schmidt
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

5.  Functional analysis of gene duplications in Saccharomyces cerevisiae.

Authors:  Yuanfang Guan; Maitreya J Dunham; Olga G Troyanskaya
Journal:  Genetics       Date:  2006-12-06       Impact factor: 4.562

6.  Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato.

Authors:  Zejun Huang; Jason Van Houten; Geoffrey Gonzalez; Han Xiao; Esther van der Knaap
Journal:  Mol Genet Genomics       Date:  2013-01-31       Impact factor: 3.291

7.  Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure.

Authors:  Alain Lecharny; Nathalie Boudet; Isabelle Gy; Sébastien Aubourg; Martin Kreis
Journal:  J Struct Funct Genomics       Date:  2003

8.  Investigating ancient duplication events in the Arabidopsis genome.

Authors:  Jeroen Raes; Klaas Vandepoele; Cedric Simillion; Yvan Saeys; Yves Van de Peer
Journal:  J Struct Funct Genomics       Date:  2003

9.  New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information.

Authors:  Hernan A Lorenzi; Daniela Puiu; Jason R Miller; Lauren M Brinkac; Paolo Amedeo; Neil Hall; Elisabet V Caler
Journal:  PLoS Negl Trop Dis       Date:  2010-06-15

10.  Sorting by reversals, block interchanges, tandem duplications, and deletions.

Authors:  Martin Bader
Journal:  BMC Bioinformatics       Date:  2009-01-30       Impact factor: 3.169

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