Literature DB >> 11682304

Detection of lateral gene transfer among microbial genomes.

M A Ragan1.   

Abstract

An increasingly comprehensive assessment is being developed of the extent and potential significance of lateral gene transfer among microbial genomes. Genomic sequences can be identified as being of putatively lateral origin by their unexpected phyletic distribution, atypical sequence composition, differential presence or absence in closely related genomes, or incongruent phylogenetic trees. These complementary approaches sometimes yield inconsistent results. Not only more data but also quantitative models and simulations are needed urgently.

Mesh：

Year:  2001        PMID： 11682304     DOI： 10.1016/s0959-437x(00)00244-6

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN： 0959-437X            Impact factor:   5.578


  58 in total

1.  Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores.

Authors:  G D Paul Clarke; Robert G Beiko; Mark A Ragan; Robert L Charlebois
Journal:  J Bacteriol       Date:  2002-04       Impact factor: 3.490

Review 2.  Mitochondria and hydrogenosomes are two forms of the same fundamental organelle.

Authors:  T Martin Embley; Mark van der Giezen; David S Horner; Patricia L Dyal; Peter Foster
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

Review 3.  How big is the iceberg of which organellar genes in nuclear genomes are but the tip?

Authors:  W F Doolittle; Y Boucher; C L Nesbø; C J Douady; J O Andersson; A J Roger
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

4.  Structure-based phylogenies of the serine beta-lactamases.

Authors:  Barry G Hall; Miriam Barlow
Journal:  J Mol Evol       Date:  2003-09       Impact factor: 2.395

5.  Discordant phylogenies within the rrn loci of Rhizobia.

Authors:  Peter van Berkum; Zewdu Terefework; Lars Paulin; Sini Suomalainen; Kristina Lindström; Bertrand D Eardly
Journal:  J Bacteriol       Date:  2003-05       Impact factor: 3.490

6.  Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach.

Authors:  Ji Qi; Bin Wang; Bai-Iin Hao
Journal:  J Mol Evol       Date:  2004-01       Impact factor: 2.395

7.  Phylogenetic evidence for the early evolution of microcystin synthesis.

Authors:  Anne Rantala; David P Fewer; Michael Hisbergues; Leo Rouhiainen; Jaana Vaitomaa; Thomas Börner; Kaarina Sivonen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-30       Impact factor: 11.205

8.  HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes.

Authors:  S Garcia-Vallve; E Guzman; M A Montero; A Romeu
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

9.  The balance of driving forces during genome evolution in prokaryotes.

Authors:  Victor Kunin; Christos A Ouzounis
Journal:  Genome Res       Date:  2003-07       Impact factor: 9.043

10.  Recombination detection under evolutionary scenarios relevant to functional divergence.

Authors:  Rachael A Bay; Joseph P Bielawski
Journal:  J Mol Evol       Date:  2012-01-01       Impact factor: 2.395
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