Literature DB >> 11679721

A quick solution: ab initio structure determination of a 19 kDa metalloproteinase using ACORN.

K E McAuley1, Y Jia-Xing, E J Dodson, J Lehmbeck, P R Østergaard, K S Wilson.   

Abstract

A data set from the metalloproteinase deuterolysin was collected at atomic resolution (1.0 A) with synchrotron radiation. The high resolution allowed the structure to be solved with the new direct-methods program ACORN using the coordinates of the Zn atom as a starting point. The phases obtained from ACORN were of sufficient quality to allow automated building to be carried out in ARP/wARP. Minimal manual rebuilding of the model was required and the structure determination was completed using the maximum-likelihood refinement program REFMAC. The whole process, starting from the processed and merged data and ending with a refined model, required less than 6 h of computational time.

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Year:  2001        PMID: 11679721     DOI: 10.1107/s090744490101335x

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  7 in total

1.  Crystallization and preliminary X-ray diffraction studies of AsaP1_E294A and AsaP1_E294Q, two inactive mutants of the toxic zinc metallopeptidase AsaP1 from Aeromonas salmonicida subsp. achromogenes.

Authors:  Xenia Bogdanović; Rajesh Kumar Singh; Johanna Hentschke; Bjarnheidur K Gudmundsdóttir; Winfried Hinrichs
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-06-27

Review 2.  Architecture and function of metallopeptidase catalytic domains.

Authors:  Núria Cerdà-Costa; Francesc Xavier Gomis-Rüth
Journal:  Protein Sci       Date:  2014-02       Impact factor: 6.725

3.  New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink "waters," and NGL Viewer to recapture online 3D graphics.

Authors:  Michael G Prisant; Christopher J Williams; Vincent B Chen; Jane S Richardson; David C Richardson
Journal:  Protein Sci       Date:  2019-12-10       Impact factor: 6.725

Review 4.  Structural aspects of the metzincin clan of metalloendopeptidases.

Authors:  F Xavier Gomis-Rüth
Journal:  Mol Biotechnol       Date:  2003-06       Impact factor: 2.695

5.  Molecular evolution of the deuterolysin (M35) family genes in Coccidioides.

Authors:  Juan Li; Li Yu; Yanmei Tian; Ke-Qin Zhang
Journal:  PLoS One       Date:  2012-02-20       Impact factor: 3.240

6.  A new density-modification procedure extending the application of the recent |ρ|-based phasing algorithm to larger crystal structures.

Authors:  Jordi Rius; Xavier Torrelles
Journal:  Acta Crystallogr A Found Adv       Date:  2021-06-21       Impact factor: 2.290

7.  The M35 Metalloprotease Effector FocM35_1 Is Required for Full Virulence of Fusarium oxysporum f. sp. cubense Tropical Race 4.

Authors:  Xiaoxia Zhang; Huoqing Huang; Bangting Wu; Jianghui Xie; Altus Viljoen; Wei Wang; Diane Mostert; Yanling Xie; Gang Fu; Dandan Xiang; Shuxia Lyu; Siwen Liu; Chunyu Li
Journal:  Pathogens       Date:  2021-05-29
  7 in total

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