Literature DB >> 11676568

Innovations in generation and analysis of 2D [(13)C,(1)H] COSY NMR spectra for metabolic flux analysis purposes.

W van Winden1, D Schipper, P Verheijen, J Heijnen.   

Abstract

2D [(13)C,(1)H] COSY NMR is used by the metabolic engineering community for determining (13)C-(13)C connectivities in intracellular compounds that contain information regarding the steady-state fluxes in cellular metabolism. This paper proposes innovations in the generation and analysis of these specific NMR spectra. These include a computer tool that allows accurate determination of the relative peak areas and their complete covariance matrices even in very complex spectra. Additionally, a method is introduced for correcting the results for isotopic non-steady-state conditions. The proposed methods were applied to measured 2D [(13)C,(1)H] COSY NMR spectra. Peak intensities in a one-dimensional section of the spectrum are frequently not representative for relative peak volumes in the two-dimensional spectrum. It is shown that for some spectra a significant amount of additional information can be gained from long-range (13)C-(13)C scalar couplings in 2D [(13)C,(1)H] COSY NMR spectra. Finally, the NMR resolution enhancement by dissolving amino acid derivatives in a nonpolar solvent is demonstrated. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11676568     DOI: 10.1006/mben.2001.0193

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  7 in total

1.  Intracellular carbon fluxes in riboflavin-producing Bacillus subtilis during growth on two-carbon substrate mixtures.

Authors:  Michael Dauner; Marco Sonderegger; Michel Hochuli; Thomas Szyperski; Kurt Wüthrich; Hans-Peter Hohmann; Uwe Sauer; James E Bailey
Journal:  Appl Environ Microbiol       Date:  2002-04       Impact factor: 4.792

2.  Global metabolic effects of glycerol kinase overexpression in rat hepatoma cells.

Authors:  Ganesh Sriram; Lola Rahib; Jian-Sen He; Allison E Campos; Lilly S Parr; James C Liao; Katrina M Dipple
Journal:  Mol Genet Metab       Date:  2007-10-29       Impact factor: 4.797

Review 3.  Metabolomic signature of brain cancer.

Authors:  Renu Pandey; Laura Caflisch; Alessia Lodi; Andrew J Brenner; Stefano Tiziani
Journal:  Mol Carcinog       Date:  2017-07-17       Impact factor: 4.784

4.  A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress.

Authors:  Bin Rui; Tie Shen; Hong Zhou; Jianping Liu; Jiusheng Chen; Xiaosong Pan; Haiyan Liu; Jihui Wu; Haoran Zheng; Yunyu Shi
Journal:  BMC Syst Biol       Date:  2010-09-01

5.  Quantification of compartmented metabolic fluxes in developing soybean embryos by employing biosynthetically directed fractional (13)C labeling, two-dimensional [(13)C, (1)H] nuclear magnetic resonance, and comprehensive isotopomer balancing.

Authors:  Ganesh Sriram; D Bruce Fulton; Vidya V Iyer; Joan Marie Peterson; Ruilian Zhou; Mark E Westgate; Martin H Spalding; Jacqueline V Shanks
Journal:  Plant Physiol       Date:  2004-10-01       Impact factor: 8.340

6.  High-resolution 13C metabolic flux analysis.

Authors:  Christopher P Long; Maciek R Antoniewicz
Journal:  Nat Protoc       Date:  2019-08-30       Impact factor: 13.491

7.  13C-metabolic flux analysis of ethanol-assimilating Saccharomyces cerevisiae for S-adenosyl-L-methionine production.

Authors:  Kenshi Hayakawa; Fumio Matsuda; Hiroshi Shimizu
Journal:  Microb Cell Fact       Date:  2018-05-31       Impact factor: 5.328

  7 in total

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