Literature DB >> 11673978

Complexation-induced unfolding of heterocyclic ureas. Simple foldamers equilibrate with multiply hydrogen-bonded sheetlike structures.

P S Corbin1, S C Zimmerman, P A Thiessen, N A Hawryluk, T J Murray.   

Abstract

The synthesis and conformational studies of heterocyclic ureas (amides) 1-7 and their concentration-dependent unfolding to form multiply hydrogen-bonded complexes are described. Ureas 1 and 7 were prepared by reacting 2-aminopyridine and aminonaphthyridine 25, respectively, with triphosgene and 4-(dimethylamino)pyridine (DMAP). Amine 25, in turn, was synthesized by a Knorr condensation of 2,6-diaminopyridine and 4,6-nonanedione. Heterocyclic ureas 3, 4, and 16 were prepared by treating their corresponding amino precursors with butylisocyanate, whereas bisureido naphthyridines 6 and 17 were prepared by heating 2,7-diamino-1,8-naphthyridine (13) with butylisocyanate and 3,4,5-tridodecyloxyphenyl isocyanate, respectively. The hydrogen-bonding modules 2 and 5 were synthesized by reacting 13 and 2-amino-1,8-naphthyridine with valeric anhydride. X-ray crystallographic analyses were performed on ureas 1, 3, 16, and 17, indicating that these ureas are intramolecularly hydrogen-bonded in the solid state. Moreover, detailed 1H NMR solution studies of 1, 3, 4, 6, and 7 indicate that similar folded structures form in chloroform. In addition, naphthyridinylureas 3 and 7 unfold and dimerize by forming four hydrogen bonds at high concentrations, and ureas 1 and 4 unfold in the presence of their hydrogen-bonding complements, amides 2 and 5, to form complexes with three and four hydrogen bonds, respectively. Likewise, the mixing of 6 and 7 results in a mutual unfolding and formation of a robust, sheetlike, sextuply hydrogen-bonded complex. The hydrogen-bonding modules described are useful building blocks for self-assembly, and the unfolding process represents a very primitive mimicry of the helix-to-sheet transition shown by peptides and potentially shown by the hypothetical naphthyridinylurea 8.

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Year:  2001        PMID: 11673978     DOI: 10.1021/ja010638q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  1,8-Naphthyridine-2,7-diamine: a potential universal reader of Watson-Crick base pairs for DNA sequencing by electron tunneling.

Authors:  Feng Liang; Stuart Lindsay; Peiming Zhang
Journal:  Org Biomol Chem       Date:  2012-11-21       Impact factor: 3.876

2.  Zinc(II) and Nickel(II) Benzoate Complexes from the Use of 1-methyl-4,5-diphenylimidazole.

Authors:  Konstantina A Kounavi; Manolis J Manos; Anastasios J Tasiopoulos; Spyros P Perlepes; Vassilios Nastopoulos
Journal:  Bioinorg Chem Appl       Date:  2010-07-21       Impact factor: 7.778

Review 3.  Molecular Self-Assembly and Supramolecular Chemistry of Cyclic Peptides.

Authors:  Qiao Song; Zihe Cheng; Maria Kariuki; Stephen C L Hall; Sophie K Hill; Julia Y Rho; Sébastien Perrier
Journal:  Chem Rev       Date:  2021-05-03       Impact factor: 60.622

4.  Hydrogen-Bonded Networks Based on Cobalt(II), Nickel(II), and Zinc(II) Complexes of N,N'-Diethylurea.

Authors:  Labrini Drakopoulou; Catherine P Raptopoulou; Aris Terzis; Giannis S Papaefstathiou
Journal:  Bioinorg Chem Appl       Date:  2010-06-27       Impact factor: 7.778

5.  Synthesis and triplex-forming properties of oligonucleotides capable of recognizing corresponding DNA duplexes containing four base pairs.

Authors:  Akihiro Ohkubo; Kenji Yamada; Yu Ito; Kiichi Yoshimura; Koichiro Miyauchi; Takashi Kanamori; Yoshiaki Masaki; Kohji Seio; Hideya Yuasa; Mitsuo Sekine
Journal:  Nucleic Acids Res       Date:  2015-05-26       Impact factor: 16.971

6.  Small anion-assisted electrochemical potential splitting in a new series of bistriarylamine derivatives: organic mixed valency across a urea bridge and zwitterionization.

Authors:  Keishiro Tahara; Tetsufumi Nakakita; Alyona A Starikova; Takashi Ikeda; Masaaki Abe; Jun-Ichi Kikuchi
Journal:  Beilstein J Org Chem       Date:  2019-09-24       Impact factor: 2.883

7.  Conformational equilibrium in supramolecular chemistry: Dibutyltriuret case.

Authors:  Karina Mroczyńska; Małgorzata Kaczorowska; Erkki Kolehmainen; Ireneusz Grubecki; Marek Pietrzak; Borys Ośmiałowski
Journal:  Beilstein J Org Chem       Date:  2015-11-05       Impact factor: 2.883

8.  Side-Chain Supramolecular Polymers Employing Conformer Independent Triple Hydrogen Bonding Arrays.

Authors:  Adam Gooch; Natasha S Murphy; Neil H Thomson; Andrew J Wilson
Journal:  Macromolecules       Date:  2013-12-11       Impact factor: 5.985

Review 9.  Supramolecular chemistry: from aromatic foldamers to solution-phase supramolecular organic frameworks.

Authors:  Zhan-Ting Li
Journal:  Beilstein J Org Chem       Date:  2015-11-02       Impact factor: 2.883

10.  Model-driven engineering of supramolecular buffering by multivalency.

Authors:  Tim F E Paffen; Abraham J P Teunissen; Tom F A de Greef; E W Meijer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-20       Impact factor: 11.205

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