Literature DB >> 11673442

The first step in polyethylene glycol degradation by sphingomonads proceeds via a flavoprotein alcohol dehydrogenase containing flavin adenine dinucleotide.

M Sugimoto1, M Tanabe, M Hataya, S Enokibara, J A Duine, F Kawai.   

Abstract

Several Sphingomonas spp. utilize polyethylene glycols (PEGs) as a sole carbon and energy source, oxidative PEG degradation being initiated by a dye-linked dehydrogenase (PEG-DH) that oxidizes the terminal alcohol groups of the polymer chain. Purification and characterization of PEG-DH from Sphingomonas terrae revealed that the enzyme is membrane bound. The gene encoding this enzyme (pegA) was cloned, sequenced, and expressed in Escherichia coli. The purified recombinant enzyme was vulnerable to aggregation and inactivation, but this could be prevented by addition of detergent. It is as a homodimeric protein with a subunit molecular mass of 58.8 kDa, each subunit containing 1 noncovalently bound flavin adenine dinucleotide but not Fe or Zn. PEG-DH recognizes a broad variety of primary aliphatic and aromatic alcohols as substrates. Comparison with known sequences revealed that PEG-DH belongs to the group of glucose-methanol-choline (GMC) flavoprotein oxidoreductases and that it is a novel type of flavoprotein alcohol dehydrogenase related (percent identical amino acids) to other, so far uncharacterized bacterial, membrane-bound, dye-linked dehydrogenases: alcohol dehydrogenase from Pseudomonas oleovorans (46%); choline dehydrogenase from E. coli (40%); L-sorbose dehydrogenase from Gluconobacter oxydans (38%); and 4-nitrobenzyl alcohol dehydrogenase from a Pseudomonas species (35%).

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Year:  2001        PMID: 11673442      PMCID: PMC95503          DOI: 10.1128/JB.183.22.6694-6698.2001

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  14 in total

1.  Aryl-alcohol oxidase protein sequence: a comparison with glucose oxidase and other FAD oxidoreductases.

Authors:  E Varela; M Jesús Martínez; A T Martínez
Journal:  Biochim Biophys Acta       Date:  2000-08-31

2.  GMC oxidoreductases. A newly defined family of homologous proteins with diverse catalytic activities.

Authors:  D R Cavener
Journal:  J Mol Biol       Date:  1992-02-05       Impact factor: 5.469

3.  Cloning and expression of ntnD, encoding a novel NAD(P)(+)-independent 4-nitrobenzyl alcohol dehydrogenase from Pseudomonas sp. Strain TW3.

Authors:  K D James; M A Hughes; P A Williams
Journal:  J Bacteriol       Date:  2000-06       Impact factor: 3.490

4.  Cloning and sequencing of the alcohol oxidase-encoding gene (AOD1) from the formaldehyde-producing asporogeneous methylotrophic yeast, Candida boidinii S2.

Authors:  Y Sakai; Y Tani
Journal:  Gene       Date:  1992-05-01       Impact factor: 3.688

5.  Cloning of genes coding for L-sorbose and L-sorbosone dehydrogenases from Gluconobacter oxydans and microbial production of 2-keto-L-gulonate, a precursor of L-ascorbic acid, in a recombinant G. oxydans strain.

Authors:  Y Saito; Y Ishii; H Hayashi; Y Imao; T Akashi; K Yoshikawa; Y Noguchi; S Soeda; M Yoshida; M Niwa; J Hosoda; K Shimomura
Journal:  Appl Environ Microbiol       Date:  1997-02       Impact factor: 4.792

6.  Bacterial oxidation of polyethylene glycol.

Authors:  F Kawai; T Kimura; M Fukaya; Y Tani; K Ogata; T Ueno; H Fukami
Journal:  Appl Environ Microbiol       Date:  1978-04       Impact factor: 4.792

7.  Biodegradation of polyethylene glycol by symbiotic mixed culture (obligate mutualism).

Authors:  F Kawai; H Yamanaka
Journal:  Arch Microbiol       Date:  1986-11       Impact factor: 2.552

8.  DNA sequence determination and functional characterization of the OCT-plasmid-encoded alkJKL genes of Pseudomonas oleovorans.

Authors:  J B van Beilen; G Eggink; H Enequist; R Bos; B Witholt
Journal:  Mol Microbiol       Date:  1992-11       Impact factor: 3.501

9.  Purification and characterization of polyethylene glycol dehydrogenase involved in the bacterial metabolism of polyethylene glycol.

Authors:  F Kawai; T Kimura; Y Tani; H Yamada; M Kurachi
Journal:  Appl Environ Microbiol       Date:  1980-10       Impact factor: 4.792

10.  Cloning and DNA sequence analysis of the glucose oxidase gene from Aspergillus niger NRRL-3.

Authors:  M Kriechbaum; H J Heilmann; F J Wientjes; M Hahn; K D Jany; H G Gassen; F Sharif; G Alaeddinoglu
Journal:  FEBS Lett       Date:  1989-09-11       Impact factor: 4.124

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  10 in total

1.  Analysis of amino acid residues involved in catalysis of polyethylene glycol dehydrogenase from Sphingopyxis terrae, using three-dimensional molecular modeling-based kinetic characterization of mutants.

Authors:  Takeshi Ohta; Takeshi Kawabata; Ken Nishikawa; Akio Tani; Kazuhide Kimbara; Fusako Kawai
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

2.  Biodegradation of polyether algal toxins--isolation of potential marine bacteria.

Authors:  Kateel G Shetty; Jacqueline V Huntzicker; Kathleen S Rein; Krish Jayachandran
Journal:  J Environ Sci Health A Tox Hazard Subst Environ Eng       Date:  2010-12       Impact factor: 2.269

3.  Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains.

Authors:  Tamara Basta; Andreas Keck; Joachim Klein; Andreas Stolz
Journal:  J Bacteriol       Date:  2004-06       Impact factor: 3.490

4.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

5.  Novel Polyoxyethylene-Containing Glycolipids Are Synthesized in Corynebacterium matruchotii and Mycobacterium smegmatis Cultured in the Presence of Tween 80.

Authors:  Cindy Wang; Engy A Mahrous; Richard E Lee; Martha M Vestling; Kuni Takayama
Journal:  J Lipids       Date:  2010-07-20

6.  Changes in the deep subsurface microbial biosphere resulting from a field-scale CO2 geosequestration experiment.

Authors:  Andre Mu; Chris Boreham; Henrietta X Leong; Ralf R Haese; John W Moreau
Journal:  Front Microbiol       Date:  2014-05-14       Impact factor: 5.640

7.  Catalytic mechanism of short ethoxy chain nonylphenol dehydrogenase belonging to a polyethylene glycol dehydrogenase group in the GMC oxidoreductase family.

Authors:  Xin Liu; Takeshi Ohta; Takeshi Kawabata; Fusako Kawai
Journal:  Int J Mol Sci       Date:  2013-01-10       Impact factor: 5.923

8.  Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader.

Authors:  Yoshiyuki Ohtsubo; Shouta Nonoyama; Yuji Nagata; Mitsuru Numata; Keiko Tsuchikane; Akira Hosoyama; Atsushi Yamazoe; Masataka Tsuda; Nobuyuki Fujita; Fusako Kawai
Journal:  Genome Announc       Date:  2016-06-09

9.  Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader.

Authors:  Yoshiyuki Ohtsubo; Shouta Nonoyama; Yuji Nagata; Mitsuru Numata; Keiko Tsuchikane; Akira Hosoyama; Atsushi Yamazoe; Masataka Tsuda; Nobuyuki Fujita; Fusako Kawai
Journal:  Genome Announc       Date:  2016-06-09

10.  Complete Genome Sequence of Sphingopyxis macrogoltabida Type Strain NBRC 15033, Originally Isolated as a Polyethylene Glycol Degrader.

Authors:  Yoshiyuki Ohtsubo; Yuji Nagata; Mitsuru Numata; Kieko Tsuchikane; Akira Hosoyama; Atsushi Yamazoe; Masataka Tsuda; Nobuyuki Fujita; Fusako Kawai
Journal:  Genome Announc       Date:  2015-12-10
  10 in total

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