Literature DB >> 11673116

Progress in the application of DNA microarrays.

E K Lobenhofer1, P R Bushel, C A Afshari, H K Hamadeh.   

Abstract

Microarray technology has been applied to a variety of different fields to address fundamental research questions. The use of microarrays, or DNA chips, to study the gene expression profiles of biologic samples began in 1995. Since that time, the fundamental concepts behind the chip, the technology required for making and using these chips, and the multitude of statistical tools for analyzing the data have been extensively reviewed. For this reason, the focus of this review will be not on the technology itself but on the application of microarrays as a research tool and the future challenges of the field.

Mesh:

Year:  2001        PMID: 11673116      PMCID: PMC1240437          DOI: 10.1289/ehp.01109881

Source DB:  PubMed          Journal:  Environ Health Perspect        ISSN: 0091-6765            Impact factor:   9.031


  183 in total

1.  Expression of cancer-related genes in human cells exposed to 60 Hz magnetic fields.

Authors:  L I Loberg; W R Engdahl; J R Gauger; D L McCormick
Journal:  Radiat Res       Date:  2000-05       Impact factor: 2.841

2.  Analysis by high density cDNA arrays of altered gene expression in human intestinal epithelial cells in response to infection with the invasive enteric bacteria Salmonella.

Authors:  L Eckmann; J R Smith; M P Housley; M B Dwinell; M F Kagnoff
Journal:  J Biol Chem       Date:  2000-05-12       Impact factor: 5.157

3.  Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2.

Authors:  R Favis; J P Day; N P Gerry; C Phelan; S Narod; F Barany
Journal:  Nat Biotechnol       Date:  2000-05       Impact factor: 54.908

4.  Classification of human ovarian tumors using multivariate data analysis of polypeptide expression patterns.

Authors:  A A Alaiya; B Franzén; A Hagman; C Silfverswärd; B Moberger; S Linder; G Auer
Journal:  Int J Cancer       Date:  2000-06-01       Impact factor: 7.396

Review 5.  The Human Genome Project--an overview.

Authors:  D R Bentley
Journal:  Med Res Rev       Date:  2000-05       Impact factor: 12.944

6.  Factor VIIa and thrombin induce the expression of Cyr61 and connective tissue growth factor, extracellular matrix signaling proteins that could act as possible downstream mediators in factor VIIa x tissue factor-induced signal transduction.

Authors:  U R Pendurthi; K E Allen; M Ezban; L V Rao
Journal:  J Biol Chem       Date:  2000-05-12       Impact factor: 5.157

7.  mRNA expression patterns in different stages of asbestos-induced carcinogenesis in rats.

Authors:  H Sandhu; W Dehnen; M Roller; J Abel; K Unfried
Journal:  Carcinogenesis       Date:  2000-05       Impact factor: 4.944

8.  Linking gene expression patterns to therapeutic groups in breast cancer.

Authors:  K J Martin; B M Kritzman; L M Price; B Koh; C P Kwan; X Zhang; A Mackay; M J O'Hare; C M Kaelin; G L Mutter; A B Pardee; R Sager
Journal:  Cancer Res       Date:  2000-04-15       Impact factor: 12.701

9.  Bone morphogenetic protein 2 (BMP-2) induces sequential changes of Id gene expression in the breast cancer cell line MCF-7.

Authors:  J H Clement; N Marr; A Meissner; M Schwalbe; W Sebald; K O Kliche; K Höffken; S Wölfl
Journal:  J Cancer Res Clin Oncol       Date:  2000-05       Impact factor: 4.553

10.  Transcript imaging of the development of human T helper cells using oligonucleotide arrays.

Authors:  L Rogge; E Bianchi; M Biffi; E Bono; S Y Chang; H Alexander; C Santini; G Ferrari; L Sinigaglia; M Seiler; M Neeb; J Mous; F Sinigaglia; U Certa
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

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  13 in total

Review 1.  Expression profiling following traumatic brain injury: a review.

Authors:  Paolo G Marciano; James H Eberwine; Ramesh Ragupathi; Kathryn E Saatman; David F Meaney; Tracy K McIntosh
Journal:  Neurochem Res       Date:  2002-10       Impact factor: 3.996

Review 2.  Strategies for identifying genes that play a role in spinal cord regeneration.

Authors:  M Wintzer; M Mladinic; D Lazarevic; C Casseler; A Cattaneo; J Nicholls
Journal:  J Anat       Date:  2004-01       Impact factor: 2.610

3.  The methodology used to measure differential gene expression affects the outcome.

Authors:  Yongzeng Ding; Li Xu; Borko D Jovanovic; Irene B Helenowski; David L Kelly; William J Catalona; Ximing J Yang; Michael Pins; Raymond C Bergan
Journal:  J Biomol Tech       Date:  2007-12

4.  Evaluation of anti-colitic effect of lactic acid bacteria in mice by cDNA microarray analysis.

Authors:  Hoyong Lee; Young-Tae Ahn; Jung-Hee Lee; Chul-Sung Huh; Dong-Hyun Kim
Journal:  Inflammation       Date:  2009-12       Impact factor: 4.092

5.  BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.

Authors:  Archana N Rao; David W Grainger
Journal:  Biomater Sci       Date:  2014-04-01       Impact factor: 6.843

6.  Proteomics in zebrafish exposed to endocrine disrupting chemicals.

Authors:  E A Shrader; T R Henry; M S Greeley; B P Bradley
Journal:  Ecotoxicology       Date:  2003-12       Impact factor: 2.823

Review 7.  The path from molecular indicators of exposure to describing dynamic biological systems in an aquatic organism: microarrays and the fathead minnow.

Authors:  Ann L Miracle; Gregory P Toth; David L Lattier
Journal:  Ecotoxicology       Date:  2003-12       Impact factor: 2.823

Review 8.  A new method for the evaluation of vaccine safety based on comprehensive gene expression analysis.

Authors:  Haruka Momose; Takuo Mizukami; Masaki Ochiai; Isao Hamaguchi; Kazunari Yamaguchi
Journal:  J Biomed Biotechnol       Date:  2010-06-13

9.  Transcriptome analysis in peripheral blood of humans exposed to environmental carcinogens: a promising new biomarker in environmental health studies.

Authors:  Danitsja M van Leeuwen; Ralph W H Gottschalk; Greet Schoeters; Nicolas A van Larebeke; Vera Nelen; Willy F Baeyens; Jos C S Kleinjans; Joost H M van Delft
Journal:  Environ Health Perspect       Date:  2008-06-23       Impact factor: 9.031

10.  Exposure to the herbicide acetochlor alters thyroid hormone-dependent gene expression and metamorphosis in Xenopus Laevis.

Authors:  Doug Crump; Kate Werry; Nik Veldhoen; Graham Van Aggelen; Caren C Helbing
Journal:  Environ Health Perspect       Date:  2002-12       Impact factor: 9.031

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