Literature DB >> 11672445

Commitment of apolipoprotein B RNA to the splicing pathway regulates cytidine-to-uridine editing-site utilization.

M P Sowden1, H C Smith.   

Abstract

A tripartite motif located in the centre of the 7.5 kb exon 26 of apolipoprotein B (apoB) mRNA directs editosome assembly and site-specific cytidine-to-uridine editing at nucleotide 6666. apoB mRNA editing is a post-transcriptional event, occurring primarily at the time exon 26 is spliced or at a time after splicing, but before nuclear export. We show, through reporter RNA constructs, that RNA splice sites suppress editing of precursor RNAs when placed proximal or distal to the editing site. Processed RNAs were edited more efficiently than precursor RNAs. Mutation of both the splice donor and acceptor sites was necessary for RNAs to be edited efficiently. The results suggested that commitment of pre-mRNA to the splicing and/or nuclear-export pathways may play a role in regulating editing-site utilization. The HIV-1 Rev-Rev response element ('RRE') interaction was utilized to uncouple the commitment of precursor RNAs to the spliceosome assembly pathway and associated nuclear-export pathway. Under these conditions, unspliced reporter RNAs were edited efficiently. We propose that pre-mRNA passage through the temporal or spatial restriction point where they become committed to spliceosome assembly contributes regulatory information for subsequent editosome activity.

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Year:  2001        PMID: 11672445      PMCID: PMC1222192          DOI: 10.1042/0264-6021:3590697

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  60 in total

1.  Evolutionary origins of apoB mRNA editing: catalysis by a cytidine deaminase that has acquired a novel RNA-binding motif at its active site.

Authors:  N Navaratnam; S Bhattacharya; T Fujino; D Patel; A L Jarmuz; J Scott
Journal:  Cell       Date:  1995-04-21       Impact factor: 41.582

2.  Intron sequence directs RNA editing of the glutamate receptor subunit GluR2 coding sequence.

Authors:  J Egebjerg; V Kukekov; S F Heinemann
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-25       Impact factor: 11.205

3.  Ethanol modulates apolipoprotein B mRNA editing in the rat.

Authors:  P P Lau; D J Cahill; H J Zhu; L Chan
Journal:  J Lipid Res       Date:  1995-10       Impact factor: 5.922

4.  In vitro reconstitution of apolipoprotein B RNA editing activity from recombinant APOBEC-1 and McArdle cell extracts.

Authors:  Y Yang; H C Smith
Journal:  Biochem Biophys Res Commun       Date:  1996-01-26       Impact factor: 3.575

5.  Specific 3' sequences flanking a minimal apolipoprotein B (apoB) mRNA editing 'cassette' are critical for efficient editing in vitro.

Authors:  J W Backus; H C Smith
Journal:  Biochim Biophys Acta       Date:  1994-01-18

6.  REPR and complementation factor(s) interact to modulate rat apolipoprotein B mRNA editing in response to alterations in cellular cholesterol flux.

Authors:  Y Inui; F Giannoni; T Funahashi; N O Davidson
Journal:  J Lipid Res       Date:  1994-08       Impact factor: 5.922

7.  Determinants involved in regulating the proportion of edited apolipoprotein B RNAs.

Authors:  M Sowden; J K Hamm; S Spinelli; H C Smith
Journal:  RNA       Date:  1996-03       Impact factor: 4.942

8.  Dimeric structure of a human apolipoprotein B mRNA editing protein and cloning and chromosomal localization of its gene.

Authors:  P P Lau; H J Zhu; A Baldini; C Charnsangavej; L Chan
Journal:  Proc Natl Acad Sci U S A       Date:  1994-08-30       Impact factor: 11.205

9.  Complementation of apolipoprotein B mRNA editing by human liver accompanied by secretion of apolipoprotein B48.

Authors:  F Giannoni; D K Bonen; T Funahashi; C Hadjiagapiou; C F Burant; N O Davidson
Journal:  J Biol Chem       Date:  1994-02-25       Impact factor: 5.157

10.  Mutagenesis of apobec-1, the catalytic subunit of the mammalian apolipoprotein B mRNA editing enzyme, reveals distinct domains that mediate cytosine nucleoside deaminase, RNA binding, and RNA editing activity.

Authors:  A J MacGinnitie; S Anant; N O Davidson
Journal:  J Biol Chem       Date:  1995-06-16       Impact factor: 5.157

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  6 in total

Review 1.  The challenge of target sequence specificity in C-->U RNA editing.

Authors:  Nicholas O Davidson
Journal:  J Clin Invest       Date:  2002-02       Impact factor: 14.808

Review 2.  Functions and regulation of the APOBEC family of proteins.

Authors:  Harold C Smith; Ryan P Bennett; Ayse Kizilyer; William M McDougall; Kimberly M Prohaska
Journal:  Semin Cell Dev Biol       Date:  2011-10-06       Impact factor: 7.727

3.  Metabolic regulation of apoB mRNA editing is associated with phosphorylation of APOBEC-1 complementation factor.

Authors:  David M Lehmann; Chad A Galloway; Mark P Sowden; Harold C Smith
Journal:  Nucleic Acids Res       Date:  2006-07-04       Impact factor: 16.971

Review 4.  Associations between activation-induced cytidine deaminase/apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like cytidine deaminase expression, hepatitis B virus (HBV) replication and HBV-associated liver disease (Review).

Authors:  Xiuting He; Jie Li; Jing Wu; Manli Zhang; Pujun Gao
Journal:  Mol Med Rep       Date:  2015-09-10       Impact factor: 2.952

Review 5.  RNA binding to APOBEC deaminases; Not simply a substrate for C to U editing.

Authors:  Harold C Smith
Journal:  RNA Biol       Date:  2016-11-21       Impact factor: 4.652

6.  Multiple tandem splicing silencer elements suppress aberrant splicing within the long exon 26 of the human Apolipoprotein B gene.

Authors:  Umasuthan Srirangalingam; Scott A Akker; Dennis Norman; Naveenan Navaratnam; Shern L Chew; Bernard Khoo
Journal:  BMC Mol Biol       Date:  2013-02-07       Impact factor: 2.946

  6 in total

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