Literature DB >> 11604020

Prediction of aqueous solubility of organic compounds by the general solubility equation (GSE).

Y Ran1, N Jain, S H Yalkowsky.   

Abstract

The revised general solubility equation (GSE) is used along with four different methods including Huuskonen's artificial neural network (ANN) and three multiple linear regression (MLR) methods to estimate the aqueous solubility of a test set of the 21 pharmaceutically and environmentally interesting compounds. For the selected test sets, it is clear that the GSE and ANN predictions are more accurate than MLR methods. The GSE has the advantages of being simple and thermodynamically sound. The only two inputs used in the GSE are the Celsius melting point (MP) and the octanol water partition coefficient (K(ow)). No fitted parameters and no training data are used in the GSE, whereas other methods utilize a large number of parameters and require a training set. The GSE is also applied to a test set of 413 organic nonelectrolytes that were studied by Huuskonen. Although the GSE uses only two parameters and no training set, its average absolute errors is only 0.1 log units larger than that of the ANN, which requires many parameters and a large training set. The average absolute error AAE is 0.54 log units using the GSE and 0.43 log units using Huuskonen's ANN modeling. This study provides evidence for the GSE being a convenient and reliable method to predict aqueous solubilities of organic compounds.

Entities:  

Year:  2001        PMID: 11604020     DOI: 10.1021/ci010287z

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  21 in total

1.  Validation subset selections for extrapolation oriented QSPAR models.

Authors:  Csaba Szántai-Kis; István Kövesdi; György Kéri; László Orfi
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

2.  In silico prediction of aqueous solubility, human plasma protein binding and volume of distribution of compounds from calculated pKa and AlogP98 values.

Authors:  Mario Lobell; Vinothini Sivarajah
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

3.  Linear and nonlinear functions on modeling of aqueous solubility of organic compounds by two structure representation methods.

Authors:  Aixia Yan; Johann Gasteiger; Michael Krug; Soheila Anzali
Journal:  J Comput Aided Mol Des       Date:  2004-02       Impact factor: 3.686

4.  Tales from the war on error: the art and science of curating QSAR data.

Authors:  Marvin Waldman; Robert Fraczkiewicz; Robert D Clark
Journal:  J Comput Aided Mol Des       Date:  2015-08-20       Impact factor: 3.686

5.  An automated PLS search for biologically relevant QSAR descriptors.

Authors:  Marius Olah; Cristian Bologa; Tudor I Oprea
Journal:  J Comput Aided Mol Des       Date:  2004 Jul-Sep       Impact factor: 3.686

6.  Substructural fragments: an universal language to encode reactions, molecular and supramolecular structures.

Authors:  A Varnek; D Fourches; F Hoonakker; V P Solov'ev
Journal:  J Comput Aided Mol Des       Date:  2005-11-16       Impact factor: 3.686

7.  Descriptor collision and confusion: toward the design of descriptors to mask chemical structures.

Authors:  Cristian Bologa; Tharun Kumar Allu; Marius Olah; Michael A Kappler; Tudor I Oprea
Journal:  J Comput Aided Mol Des       Date:  2005-12-02       Impact factor: 3.686

8.  Lead-like, drug-like or "Pub-like": how different are they?

Authors:  Tudor I Oprea; Tharun Kumar Allu; Dan C Fara; Ramona F Rad; Lili Ostopovici; Cristian G Bologa
Journal:  J Comput Aided Mol Des       Date:  2007-02-28       Impact factor: 3.686

9.  Estimating the domain of applicability for machine learning QSAR models: a study on aqueous solubility of drug discovery molecules.

Authors:  Timon Sebastian Schroeter; Anton Schwaighofer; Sebastian Mika; Antonius Ter Laak; Detlev Suelzle; Ursula Ganzer; Nikolaus Heinrich; Klaus-Robert Müller
Journal:  J Comput Aided Mol Des       Date:  2007-12-01       Impact factor: 3.686

10.  Estimating the domain of applicability for machine learning QSAR models: a study on aqueous solubility of drug discovery molecules.

Authors:  Timon Sebastian Schroeter; Anton Schwaighofer; Sebastian Mika; Antonius Ter Laak; Detlev Suelzle; Ursula Ganzer; Nikolaus Heinrich; Klaus-Robert Müller
Journal:  J Comput Aided Mol Des       Date:  2007-07-14       Impact factor: 3.686

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