Literature DB >> 11602275

SCORPION, a molecular database of scorpion toxins.

K N Srinivasan1, P Gopalakrishnakone, P T Tan, K C Chew, B Cheng, R M Kini, J L Koh, S H Seah, V Brusic.   

Abstract

Increasing interest in the studies of toxins and the requirements for better structural and functional annotations have created a need for improved data management in the field of toxins. The molecular database, SCORPION, contains more than 200 entries of fully referenced scorpion toxin data including primary sequences, three-dimensional structures, structural and functional annotations of scorpion toxins along with relevant literature references. SCORPION has a set of search tools that allow users to extract data and perform specific queries. These entries have been compiled from public databases and literature, cleaned of errors and enriched with additional structural and functional information. The grouping of scorpion toxins provides a basis for extending and clarifying the existing structural and functional classifications. The bioinformatics modules in SCORPION facilitate analyses aimed at classification of scorpion toxins and identification of sequence patterns associated with specific structural or functional properties of scorpion toxins. The SCORPION database is accessible via the Internet at sdmc.krdl.org.sg:8080/scorpion.

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Year:  2002        PMID: 11602275     DOI: 10.1016/s0041-0101(01)00182-9

Source DB:  PubMed          Journal:  Toxicon        ISSN: 0041-0101            Impact factor:   3.033


  25 in total

1.  CysView: protein classification based on cysteine pairing patterns.

Authors:  Johann Lenffer; Paulo Lai; Wafaa El Mejaber; Asif M Khan; Judice L Y Koh; Paul T J Tan; Seng H Seah; Vladimir Brusic
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Simulation of the interaction between ScyTx and small conductance calcium-activated potassium channel by docking and MM-PBSA.

Authors:  Yingliang Wu; Zhijian Cao; Hong Yi; Dahe Jiang; Xin Mao; Hui Liu; Wenxin Li
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

Review 3.  Tarantula toxins interacting with voltage sensors in potassium channels.

Authors:  Kenton J Swartz
Journal:  Toxicon       Date:  2006-09-29       Impact factor: 3.033

Review 4.  Site-3 toxins and cardiac sodium channels.

Authors:  Dorothy A Hanck; Michael F Sheets
Journal:  Toxicon       Date:  2006-09-27       Impact factor: 3.033

5.  A systematic bioinformatics approach for selection of epitope-based vaccine targets.

Authors:  Asif M Khan; Olivo Miotto; A T Heiny; Jerome Salmon; K N Srinivasan; Eduardo J M Nascimento; Ernesto T A Marques; Vladimir Brusic; Tin Wee Tan; J Thomas August
Journal:  Cell Immunol       Date:  2007-04-16       Impact factor: 4.868

6.  The EROP-Moscow oligopeptide database.

Authors:  Alexander A Zamyatnin; Alexander S Borchikov; Michail G Vladimirov; Olga L Voronina
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus.

Authors:  Asif M Khan; A T Heiny; Kenneth X Lee; K N Srinivasan; Tin Wee Tan; J Thomas August; Vladimir Brusic
Journal:  BMC Bioinformatics       Date:  2006-12-18       Impact factor: 3.169

8.  Vasorelaxin: a novel arterial smooth muscle-relaxing eicosapeptide from the skin secretion of the Chinese piebald odorous frog (Odorrana schmackeri).

Authors:  Yuxin Wu; Lei Wang; Chen Lin; Yan Lin; Mei Zhou; Liang Chen; Brian Connolly; Yingqi Zhang; Tianbao Chen; Chris Shaw
Journal:  PLoS One       Date:  2013-02-06       Impact factor: 3.240

Review 9.  Scorpion toxins specific for potassium (K+) channels: a historical overview of peptide bioengineering.

Authors:  Zachary L Bergeron; Jon-Paul Bingham
Journal:  Toxins (Basel)       Date:  2012-11-01       Impact factor: 4.546

10.  SuperToxic: a comprehensive database of toxic compounds.

Authors:  Ulrike Schmidt; Swantje Struck; Bjoern Gruening; Julia Hossbach; Ines S Jaeger; Roza Parol; Ulrike Lindequist; Eberhard Teuscher; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2008-11-12       Impact factor: 16.971

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