Literature DB >> 11601858

A standard reference frame for the description of nucleic acid base-pair geometry.

W K Olson, M Bansal, S K Burley, R E Dickerson, M Gerstein, S C Harvey, U Heinemann, X J Lu, S Neidle, Z Shakked, H Sklenar, M Suzuki, C S Tung, E Westhof, C Wolberger, H M Berman.   

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Year:  2001        PMID： 11601858     DOI： 10.1006/jmbi.2001.4987

Source DB:  PubMed          Journal:  J Mol Biol        ISSN： 0022-2836            Impact factor:   5.469


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  201 in total

1.  Structural origins of adenine-tract bending.

Authors:  Andrej Barbic; Daniel P Zimmer; Donald M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-13       Impact factor: 11.205

2.  The mechanism of topoisomerase I poisoning by a camptothecin analog.

Authors:  Bart L Staker; Kathryn Hjerrild; Michael D Feese; Craig A Behnke; Alex B Burgin; Lance Stewart
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-08       Impact factor: 11.205

3.  DNA A-tract bending in three dimensions: solving the dA4T4 vs. dT4A4 conundrum.

Authors:  Richard Stefl; Haihong Wu; Sapna Ravindranathan; Vladimír Sklenár; Juli Feigon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-22       Impact factor: 11.205

4.  Tools for the automatic identification and classification of RNA base pairs.

Authors:  Huanwang Yang; Fabrice Jossinet; Neocles Leontis; Li Chen; John Westbrook; Helen Berman; Eric Westhof
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space.

Authors:  Carlos M Duarte; Leven M Wadley; Anna Marie Pyle
Journal:  Nucleic Acids Res       Date:  2003-08-15       Impact factor: 16.971

6.  3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

Authors:  Xiang-Jun Lu; Wilma K Olson
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

7.  Toward a consensus view of duplex RNA flexibility.

Authors:  Ignacio Faustino; Alberto Pérez; Modesto Orozco
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

8.  The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.

Authors:  Stefano Stella; Duilio Cascio; Reid C Johnson
Journal:  Genes Dev       Date:  2010-04-15       Impact factor: 11.361

9.  How stiff is DNA?

Authors:  Guohui Zheng; Luke Czapla; A R Srinivasan; Wilma K Olson
Journal:  Phys Chem Chem Phys       Date:  2009-12-23       Impact factor: 3.676

10.  Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.

Authors:  Maximillian H Bailor; Catherine Musselman; Alexandar L Hansen; Kush Gulati; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491
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