Literature DB >> 11597768

Identification of three novel non-classical cadherin genes through comprehensive analysis of large cDNAs.

D Nakajima1, M Nakayama, R Kikuno, M Hirosawa, T Nagase, O Ohara.   

Abstract

The terminal sequences of long cDNAs from human brains were subjected to an improved method of motif-trap screening. This process resulted in the identification of three novel genes that encode proteins with 27, 27, and six cadherin domains that we denoted as KIAA1773, KIAA1774 and KIAA1775, respectively. Sequence analysis indicated that the products of these genes were non-classical cadherins. KIAA1773 was found to be a mammalian homologue of the Drosophila dachsous gene but the remaining two genes did not have any likely homologues in public databases. Assessment of their expression in rat tissues indicated that these genes are expressed in highly distinct and tissue-specific patterns. Notably, KIAA1775 is expressed almost exclusively in the olfactory bulb in the rat brain. In situ hybridization further showed that KIAA1775 is strongly expressed by the mitral and tufted cells in the main and accessory olfactory bulbs, suggesting that KIAA1775 may be important in the formation and maintenance of neuronal networks, particularly those in the olfactory bulb. This study clearly shows the importance and usefulness of our cDNA project in search for genes encoding large proteins, as this project has allowed us to identify several novel non-classical cadherin genes that have thus far not been detected by conventional methods.

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Year:  2001        PMID: 11597768     DOI: 10.1016/s0169-328x(01)00218-2

Source DB:  PubMed          Journal:  Brain Res Mol Brain Res        ISSN: 0169-328X


  15 in total

1.  Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs.

Authors:  Manabu Nakayama; Reiko Kikuno; Osamu Ohara
Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

Review 2.  Hippo signaling: growth control and beyond.

Authors:  Georg Halder; Randy L Johnson
Journal:  Development       Date:  2011-01       Impact factor: 6.868

3.  Transgene expression in target-defined neuron populations mediated by retrograde infection with adeno-associated viral vectors.

Authors:  Markus Rothermel; Daniela Brunert; Christine Zabawa; Marta Díaz-Quesada; Matt Wachowiak
Journal:  J Neurosci       Date:  2013-09-18       Impact factor: 6.167

4.  Mutations in PCDH21 cause autosomal recessive cone-rod dystrophy.

Authors:  E Ostergaard; M Batbayli; M Duno; K Vilhelmsen; T Rosenberg
Journal:  J Med Genet       Date:  2010-08-30       Impact factor: 6.318

5.  Biomarkers of human gastrointestinal tract regions.

Authors:  Elena Maria Comelli; Sofiane Lariani; Marie-Camille Zwahlen; Grigorios Fotopoulos; James Anthony Holzwarth; Christine Cherbut; Gian Dorta; Irène Corthésy-Theulaz; Martin Grigorov
Journal:  Mamm Genome       Date:  2009-08-27       Impact factor: 2.957

6.  RNA-seq analysis of developing olfactory bulb projection neurons.

Authors:  Yuka Imamura Kawasawa; Anna C Salzberg; Mingfeng Li; Nenad Šestan; Charles A Greer; Fumiaki Imamura
Journal:  Mol Cell Neurosci       Date:  2016-04-09       Impact factor: 4.314

7.  Structural determinants of cadherin-23 function in hearing and deafness.

Authors:  Marcos Sotomayor; Wilhelm A Weihofen; Rachelle Gaudet; David P Corey
Journal:  Neuron       Date:  2010-04-15       Impact factor: 17.173

8.  A novel splice site mutation of CDHR1 in a consanguineous Israeli Christian Arab family segregating autosomal recessive cone-rod dystrophy.

Authors:  Ben Cohen; Elena Chervinsky; Haneen Jabaly-Habib; Stavit A Shalev; Daniel Briscoe; Tamar Ben-Yosef
Journal:  Mol Vis       Date:  2012-12-01       Impact factor: 2.367

9.  Influence of olfactory epithelium on mitral/tufted cell dendritic outgrowth.

Authors:  Ha Tran; Huaiyang Chen; Andreas Walz; Jamie C Posthumus; Qizhi Gong
Journal:  PLoS One       Date:  2008-11-26       Impact factor: 3.240

Review 10.  Neuronal organization of olfactory bulb circuits.

Authors:  Shin Nagayama; Ryota Homma; Fumiaki Imamura
Journal:  Front Neural Circuits       Date:  2014-09-03       Impact factor: 3.492

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