Literature DB >> 11595220

Modeling of deoxy- and dideoxyaldohexopyranosyl ring puckering with MM3(92).

W M Rockey1, M K Dowd, P J Reilly, A D French.   

Abstract

Extensive variations of the ring structures of three deoxyaldohexopyranoses, L-fucose, D-quinovose, and L-rhamnose, and four dideoxyaldohexopyranoses, D-digitoxose, abequose, paratose, and tyvelose, were studied by energy minimization with the molecular mechanics algorithm MM3(92). Chair conformers, 4C(1) in D-quinovose and the equivalent 1C(4) in L-fucose and L-rhamnose, overwhelmingly dominate in the three deoxyhexoses; in the D-dideoxyhexoses, 4C(1) is again dominant, but with increased amounts of 1C(4) forms in the alpha anomers of the three 3,6-dideoxyhexoses, abequose, paratose, and tyvelose and in both alpha and beta anomers of the 2,6-dideoxyhexose D-digitoxose. In general, modeled proton-proton coupling constants agreed well with experimental values. Computed anomeric ratios strongly favor the beta configuration except for D-digitoxose, which is almost equally divided between alpha and beta configurations, and L-rhamnose, where the beta configuration is somewhat favored. MM3(92) appears to overstate the prevalence of the equatorial beta anomer in all three deoxyhexoses, as earlier found with fully oxygenated aldohexopyranoses.

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Year:  2001        PMID: 11595220     DOI: 10.1016/s0008-6215(01)00240-3

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  2 in total

1.  Probing deoxysugar conformational preference: A comprehensive computational study investigating the effects of deoxygenation.

Authors:  Alison E Vickman; Nicola L B Pohl
Journal:  Carbohydr Res       Date:  2018-12-12       Impact factor: 2.104

2.  Structure of l-rhamnose isomerase in complex with l-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site.

Authors:  Hiromi Yoshida; Akihide Yoshihara; Misa Teraoka; Satoshi Yamashita; Ken Izumori; Shigehiro Kamitori
Journal:  FEBS Open Bio       Date:  2012-12-07       Impact factor: 2.693

  2 in total

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