Literature DB >> 11591466

Misunderstandings about isochores. Part 1.

G Bernardi1.   

Abstract

A few months ago the International Human Genome Sequencing Consortium (IHGSC) published a 61-page paper on the human genome (IHGSC, Nature 409 (2001) 860). Here comments will be presented on some points of the paper that were previously investigated in our laboratory, and some misunderstandings and misconceptions about the organization and the evolutionary history of the human genome will be discussed. A very recent article on the same subject (Eyre-Walker and Hurst, Nat. Rev. Genet. 2 (2001) 549) will also be addressed. The present paper is a complement to two review articles which were published last year (Bernardi, Gene 241 (2000) 3; Gene 259(1) (2000) 31).

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Year:  2001        PMID: 11591466     DOI: 10.1016/s0378-1119(01)00644-8

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  34 in total

1.  Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates.

Authors:  Hideyuki Tanabe; Stefan Müller; Michaela Neusser; Johann von Hase; Enzo Calcagno; Marion Cremer; Irina Solovei; Christoph Cremer; Thomas Cremer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-02       Impact factor: 11.205

2.  Using analytical ultracentrifugation to study compositional variation in vertebrate genomes.

Authors:  Oliver Clay; Christophe J Douady; Nicolas Carels; Sandrine Hughes; Giuseppe Bucciarelli; Giorgio Bernardi
Journal:  Eur Biophys J       Date:  2003-04-09       Impact factor: 1.733

3.  Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Paul M Harrison; Yin Liu; Mark Gerstein
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

4.  DNA helix: the importance of being GC-rich.

Authors:  Alexander E Vinogradov
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

5.  Duplication, coclustering, and selection of human Alu retrotransposons.

Authors:  Jerzy Jurka; Oleksiy Kohany; Adam Pavlicek; Vladimir V Kapitonov; Michael V Jurka
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-21       Impact factor: 11.205

6.  Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Paul Harrison; Mark Gerstein
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

7.  Compositional gene landscapes in vertebrates.

Authors:  Stéphane Cruveiller; Kamel Jabbari; Oliver Clay; Giorgio Bernardi
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

8.  IsoFinder: computational prediction of isochores in genome sequences.

Authors:  José L Oliver; Pedro Carpena; Michael Hackenberg; Pedro Bernaola-Galván
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

9.  The biased distribution of Alus in human isochores might be driven by recombination.

Authors:  Michael Hackenberg; Pedro Bernaola-Galván; Pedro Carpena; José L Oliver
Journal:  J Mol Evol       Date:  2005-03       Impact factor: 2.395

10.  Conservation of human alternative splice events in mouse.

Authors:  T A Thanaraj; Francis Clark; Juha Muilu
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

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