Literature DB >> 11576546

'Empty' minicircles and petB/atpA and psbD/psbE (cytb559 alpha) genes in tandem in Amphidinium carterae plastid DNA.

R G Hiller1.   

Abstract

Amphidinium carterae minicircle chloroplast DNA was separated from total DNA by centrifugation through a sucrose/NaCl gradient. Sequences of minicircles with psbA and 23S rRNA contained a common region of 67 bp. Primers designed from this generated numerous polymerase chain reaction products of 1.5-2.6 kb. These contained psaA and psaB as one gene/circle, and petB/atpA and psbD/psbE as two genes/circle. 'Empty' minicircles of 1.7-2.5 kb containing no identifiable genes or parts of genes were more abundant than gene-containing circles. From 15 minicircles a minimum common region of 48 bp was identified, with little identity to that from other dinoflagellate minicircles.

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Year:  2001        PMID： 11576546     DOI： 10.1016/s0014-5793(01)02871-x

Source DB:  PubMed          Journal:  FEBS Lett        ISSN： 0014-5793            Impact factor:   4.124


  11 in total

Review 1.  Evolution of the chloroplast genome.

Authors:  Christopher J Howe; Adrian C Barbrook; V Lila Koumandou; R Ellen R Nisbet; Hamish A Symington; Tom F Wightman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

2.  Rate variation as a function of gene origin in plastid-derived genes of peridinin-containing dinoflagellates.

Authors:  Tsvetan R Bachvaroff; M Virginia Sanchez-Puerta; Charles F Delwiche
Journal:  J Mol Evol       Date:  2006-01-11       Impact factor: 2.395

3.  Identification of transcribed and persistent variants of the psbA gene carried by plastid minicircles in a dinoflagellate.

Authors:  Satoko Iida; Atsushi Kobiyama; Takehiko Ogata; Akio Murakami
Journal:  Curr Genet       Date:  2009-10       Impact factor: 3.886

4.  Long transcripts from dinoflagellate chloroplast minicircles suggest "rolling circle" transcription.

Authors:  Yunkun Dang; Beverley R Green
Journal:  J Biol Chem       Date:  2009-11-30       Impact factor: 5.157

5.  Genomic reduction and evolution of novel genetic membranes and protein-targeting machinery in eukaryote-eukaryote chimaeras (meta-algae).

Authors:  T Cavalier-Smith
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

6.  Polyuridylylation and processing of transcripts from multiple gene minicircles in chloroplasts of the dinoflagellate Amphidinium carterae.

Authors:  Adrian C Barbrook; Richard G Dorrell; Jennifer Burrows; Lindsey J Plenderleith; R Ellen R Nisbet; Christopher J Howe
Journal:  Plant Mol Biol       Date:  2012-05-05       Impact factor: 4.076

7.  Purification of plastids from the dinoflagellate Lingulodinium.

Authors:  Yunling Wang; Tyler MacKenzie; David Morse
Journal:  Mar Biotechnol (NY)       Date:  2005-08-23       Impact factor: 3.727

8.  Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes.

Authors:  Adrian C Barbrook; Nicole Santucci; Lindsey J Plenderleith; Roger G Hiller; Christopher J Howe
Journal:  BMC Genomics       Date:  2006-11-23       Impact factor: 3.969

9.  The replication of plastid minicircles involves rolling circle intermediates.

Authors:  Siu Kai Leung; Joseph T Y Wong
Journal:  Nucleic Acids Res       Date:  2009-02-10       Impact factor: 16.971

10.  Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome.

Authors:  Sutada Mungpakdee; Chuya Shinzato; Takeshi Takeuchi; Takeshi Kawashima; Ryo Koyanagi; Kanako Hisata; Makiko Tanaka; Hiroki Goto; Manabu Fujie; Senjie Lin; Nori Satoh; Eiichi Shoguchi
Journal:  Genome Biol Evol       Date:  2014-05-31       Impact factor: 3.416
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