Literature DB >> 11575773

Stabilities and isomeric equilibria in solutions of monomeric metal-ion complexes of guanosine 5'-triphosphate (GTP4-) and inosine 5'-triphosphate (ITP4-) in comparison with those of adenosine 5'-triphosphate (ATP4-).

H Sigel1, E M Bianchi, N A Corfù, Y Kinjo, R Tribolet, R B Martin.   

Abstract

Under experimental conditions in which the self-association of the purine-nucleoside 5'-triphosphates (PuNTPs) GTP and ITP is negligible, potentiometric pH titrations were carried out to determine the stabilities of the M(H;PuNTP) and M(PuNTP)2-complexes where M2+ = Mg2+, Ca2+, Sr2+. Ba2+, Mn2+, Co2+, Ni2+, Cu2+, Zn2+, or Cd2+ (I = 0.1 M, 25 degrees C). The stabilities of all M(GTP)2- and M(ITP)2- complexes are significantly larger than those of the corresponding complexes formed with pyrimidine-nucleoside 5'-triphosphates (PyNTPs), which had been determined previously under the same conditions. This increased complex stability is attributed, in agreement with previous 1H MNR shift studies, to the formation of macrochelates of the phosphate-coordinated metal ions with N7 of the purine residues. A similar enhanced stability (despite relatively large error limits) was observed for the M(H;PuNTP) complexes, in which H+ is bound to the terminal y-phosphate group, relative to the stability of the M(H;PyNTP)- species. The percentage of the macrochelated isomers in the M(GTP)2- and M(ITP)2- systems was quantified by employing the difference log KMM(PuNTP)-log KMM(PyNTP); the lowest and highest formation degrees of the macrochelates were observed for Mg(ITP)2- and Cu(GTP)2- with 17 +/- 11% and 97 +/- 1%, respectively. From previous studies of M(ATP)2- complexes, it is known that innersphere and outersphere macrochelates may form; that is, in the latter case a water molecule is between N7 and the phosphate-coordinated M2+. Similar conclusions are reached now by comparisons with earlier 1H MNR shift measurements, that is, that Mg(GTP)2- (21 +/- 11%), for example, exists largely in the form of an outersphere macrochelate and Zn(GTP)2- (68 +/- 4%) as an innersphere one. Generally, the overall percentage of macrochelate falls off for a given metal ion in the order M(GTP)2- > M(ITP)2- > M(ATP)2-; this is in accord with the decreasing basicity of N7 and the steric inhibition of the (C6)NH2 group in the adenine residue. Furthermore, although the absolute stability constants of the previously studied M(GMP), M(IMP), and M(AMP) complexes differ by about two to three log units from the present M(PuNTP)2- results, the formation degrees of the macrochelates are astonishingly similar for the two series of nucleotides for a given metal ion and purine-nucleobase residue. The conclusion that N7 of the guanine residue is an especially favored binding site for metal ions is also in accord with observations made for nucleic acids.

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Year:  2001        PMID: 11575773     DOI: 10.1002/1521-3765(20010903)7:17<3729::aid-chem3729>3.0.co;2-e

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  6 in total

1.  Studies of Mg2+/Ca2+ complexes of naturally occurring dinucleotides: potentiometric titrations, NMR, and molecular dynamics.

Authors:  Noa Stern; Dan Thomas Major; Hugo Emilio Gottlieb; Daniel Weizman; Alon Haim Sayer; Eliav Blum; Bilha Fischer
Journal:  J Biol Inorg Chem       Date:  2012-05-18       Impact factor: 3.358

2.  Solution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain.

Authors:  Miriam Skilandat; Magdalena Rowinska-Zyrek; Roland K O Sigel
Journal:  J Biol Inorg Chem       Date:  2014-03-21       Impact factor: 3.358

3.  Studying metal ion binding properties of a three-way junction RNA by heteronuclear NMR.

Authors:  Simona Bartova; Maria Pechlaner; Daniela Donghi; Roland K O Sigel
Journal:  J Biol Inorg Chem       Date:  2016-02-15       Impact factor: 3.358

4.  A quantitative appraisal of the ambivalent metal ion binding properties of cytidine in aqueous solution and an estimation of the anti-syn energy barrier of cytidine derivatives.

Authors:  Bernd Knobloch; Helmut Sigel
Journal:  J Biol Inorg Chem       Date:  2004-03-19       Impact factor: 3.358

5.  Gas-Phase Internal Ribose Residue Loss from Mg-ATP and Mg-ADP Complexes: Experimental and Theoretical Evidence for Phosphate-Mg-Adenine Interaction.

Authors:  Magdalena Frańska; Olga Stȩżycka; Wojciech Jankowski; Marcin Hoffmann
Journal:  J Am Soc Mass Spectrom       Date:  2022-07-07       Impact factor: 3.262

6.  TRPM7 channel is regulated by magnesium nucleotides via its kinase domain.

Authors:  Philippe Demeuse; Reinhold Penner; Andrea Fleig
Journal:  J Gen Physiol       Date:  2006-03-13       Impact factor: 4.086

  6 in total

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