Literature DB >> 11567150

Patterson correlation methods: a review of molecular replacement with CNS.

R W Grosse-Kunstleve1, P D Adams.   

Abstract

This paper presents a review of the principles of molecular replacement with the audience of the CCP4 Study Weekend in mind. A complementary presentation with animated Patterson maps is available online (http://cci.lbl.gov/-rwgk/ccp4sw2001/). The implementation of molecular-replacement methods in the Crystallography and NMR System (CNS) is presented and discussed in some detail. The three principal components are the direct rotation function, Patterson correlation refinement and the fast translation function. CNS is available online and is free of charge for academic users.

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Year:  2001        PMID： 11567150     DOI： 10.1107/s090744490101246x

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN： 0907-4449


  7 in total

1.  The structure of lombricine kinase: implications for phosphagen kinase conformational changes.

Authors:  D Jeffrey Bush; Olga Kirillova; Shawn A Clark; Omar Davulcu; Felcy Fabiola; Qing Xie; Thayumanasamy Somasundaram; W Ross Ellington; Michael S Chapman
Journal:  J Biol Chem       Date:  2011-01-06       Impact factor: 5.157

2.  Production, crystallization and X-ray characterization of chemically glycosylated hen egg-white lysozyme.

Authors:  F J López-Jaramillo; F Pérez-Banderas; F Hernández-Mateo; F Santoyo-González
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-04-01

3.  Exploiting tertiary structure through local folds for crystallographic phasing.

Authors:  Massimo Sammito; Claudia Millán; Dayté D Rodríguez; Iñaki M de Ilarduya; Kathrin Meindl; Ivan De Marino; Giovanna Petrillo; Rubén M Buey; José M de Pereda; Kornelius Zeth; George M Sheldrick; Isabel Usón
Journal:  Nat Methods       Date:  2013-09-15       Impact factor: 28.547

4.  MR-REX: molecular replacement by cooperative conformational search and occupancy optimization on low-accuracy protein models.

Authors:  Jouko J Virtanen; Yang Zhang
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-06-08       Impact factor: 7.652

5.  NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: structures of closed and open forms at 1.15 and 1.90 A resolution.

Authors:  Christopher J Carrell; Robert C Bruckner; David Venci; Gouhua Zhao; Marilyn Schuman Jorns; F Scott Mathews
Journal:  Structure       Date:  2007-08       Impact factor: 5.006

6.  NCS-constrained exhaustive search using oligomeric models.

Authors:  Michail N Isupov; Andrey A Lebedev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05

Review 7.  Molecular replacement then and now.

Authors:  Giovanna Scapin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-10-18
  7 in total

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