Literature DB >> 11566890

Distinct requirements for C.elegans TAF(II)s in early embryonic transcription.

A K Walker1, J H Rothman, Y Shi, T K Blackwell.   

Abstract

TAF(II)s are conserved components of the TFIID, TFTC and SAGA-related mRNA transcription complexes. In yeast (y), yTAF(II)17 is required broadly for transcription, but various other TAF(II)s appear to have more specialized functions. It is important to determine how TAF(II)s contribute to transcription in metazoans, which have larger and more diverse genomes. We have examined TAF(II) functions in early Caenorhabditis elegans embryos, which can survive without transcription for several cell generations. We show that taf-10 (yTAF(II)17) and taf-11 (yTAF(II)25) are required for a significant fraction of transcription, but apparently are not needed for expression of multiple developmental and other metazoan-specific genes. In contrast, taf-5 (yTAF(II)48; human TAF(II)130) seems to be required for essentially all early embryonic mRNA transcription. We conclude that TAF-10 and TAF-11 have modular functions in metazoans, and can be bypassed at many metazoan-specific genes. The broad involvement of TAF-5 in mRNA transcription in vivo suggests a requirement for either TFIID or a TFTC-like complex.

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Year:  2001        PMID: 11566890      PMCID: PMC125634          DOI: 10.1093/emboj/20.18.5269

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  72 in total

Review 1.  The histone fold is a key structural motif of transcription factor TFIID.

Authors:  Y G Gangloff; C Romier; S Thuault; S Werten; I Davidson
Journal:  Trends Biochem Sci       Date:  2001-04       Impact factor: 13.807

2.  Histone folds mediate selective heterodimerization of yeast TAF(II)25 with TFIID components yTAF(II)47 and yTAF(II)65 and with SAGA component ySPT7.

Authors:  Y G Gangloff; S L Sanders; C Romier; D Kirschner; P A Weil; L Tora; I Davidson
Journal:  Mol Cell Biol       Date:  2001-03       Impact factor: 4.272

3.  The draft sequences. Comparing species.

Authors:  G M Rubin
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

4.  Restriction of mesendoderm to a single blastomere by the combined action of SKN-1 and a GSK-3beta homolog is mediated by MED-1 and -2 in C. elegans.

Authors:  M F Maduro; M D Meneghini; B Bowerman; G Broitman-Maduro; J H Rothman
Journal:  Mol Cell       Date:  2001-03       Impact factor: 17.970

5.  Histone-like TAFs within the PCAF histone acetylase complex.

Authors:  V V Ogryzko; T Kotani; X Zhang; R L Schiltz; T Howard; X J Yang; B H Howard; J Qin; Y Nakatani
Journal:  Cell       Date:  1998-07-10       Impact factor: 41.582

6.  Genetic requirements for PIE-1 localization and inhibition of gene expression in the embryonic germ lineage of Caenorhabditis elegans.

Authors:  C Tenenhaus; C Schubert; G Seydoux
Journal:  Dev Biol       Date:  1998-08-15       Impact factor: 3.582

7.  TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish.

Authors:  F Müller; L Lakatos; J Dantonel; U Strähle; L Tora
Journal:  Curr Biol       Date:  2001-02-20       Impact factor: 10.834

8.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

9.  Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains.

Authors:  D B Bregman; L Du; S van der Zee; S L Warren
Journal:  J Cell Biol       Date:  1995-04       Impact factor: 10.539

10.  Soma-germline asymmetry in the distributions of embryonic RNAs in Caenorhabditis elegans.

Authors:  G Seydoux; A Fire
Journal:  Development       Date:  1994-10       Impact factor: 6.868

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  18 in total

1.  Staying alive in adversity: transcriptome dynamics in the stress-resistant dauer larva.

Authors:  Suzan J Holt
Journal:  Funct Integr Genomics       Date:  2006-04-25       Impact factor: 3.410

2.  Transcription reactivation steps stimulated by oocyte maturation in C. elegans.

Authors:  Amy K Walker; Peter R Boag; T Keith Blackwell
Journal:  Dev Biol       Date:  2006-12-23       Impact factor: 3.582

3.  TAF4 inactivation in embryonic fibroblasts activates TGF beta signalling and autocrine growth.

Authors:  Gabrielle Mengus; Anas Fadloun; Dominique Kobi; Christelle Thibault; Lucia Perletti; Isabelle Michel; Irwin Davidson
Journal:  EMBO J       Date:  2005-07-14       Impact factor: 11.598

4.  Isoform-specific interaction of HP1 with human TAFII130.

Authors:  Milo F Vassallo; Naoko Tanese
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

5.  TAF9b (formerly TAF9L) is a bona fide TAF that has unique and overlapping roles with TAF9.

Authors:  Mattia Frontini; Evi Soutoglou; Manuela Argentini; Christine Bole-Feysot; Bernard Jost; Elisabeth Scheer; Làszlò Tora
Journal:  Mol Cell Biol       Date:  2005-06       Impact factor: 4.272

6.  Histone deacetylase 1 activates PU.1 gene transcription through regulating TAF9 deacetylation and transcription factor IID assembly.

Authors:  Wei Jian; Bowen Yan; Suming Huang; Yi Qiu
Journal:  FASEB J       Date:  2017-06-01       Impact factor: 5.191

7.  Global transcriptional repression in C. elegans germline precursors by regulated sequestration of TAF-4.

Authors:  Tugba Guven-Ozkan; Yuichi Nishi; Scott M Robertson; Rueyling Lin
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

8.  TAF10 (TAF(II)30) is necessary for TFIID stability and early embryogenesis in mice.

Authors:  William S Mohan; Elisabeth Scheer; Olivia Wendling; Daniel Metzger; Làszlò Tora
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

9.  CDK-9/cyclin T (P-TEFb) is required in two postinitiation pathways for transcription in the C. elegans embryo.

Authors:  Eun Yong Shim; Amy K Walker; Yang Shi; T Keith Blackwell
Journal:  Genes Dev       Date:  2002-08-15       Impact factor: 11.361

Review 10.  The paradox of mitochondrial dysfunction and extended longevity.

Authors:  Erin Munkácsy; Shane L Rea
Journal:  Exp Gerontol       Date:  2014-04-01       Impact factor: 4.032

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