Literature DB >> 11563053

LNA (locked nucleic acid) and the diastereoisomeric alpha-L-LNA: conformational tuning and high-affinity recognition of DNA/RNA targets.

J Wengel1, M Petersen, K E Nielsen, G A Jensen, A E Håkansson, R Kumar, M D Sørensen, V K Rajwanshi, T Bryld, J P Jacobsen.   

Abstract

The remarkable binding properties of LNA (Locked Nucleic Acid) and alpha-L-LNA (the alpha-L-ribo configured diastereoisomer of LNA) are summarized, and hybridization results for LNA/2'-O-Me-RNA chimera and LNAs with a "dangling" nucleotide are introduced. In addition, results from NMR investigations on the furanose conformations of the individual nucleotide monomers in different duplexes are presented. All these data are discussed with focus on the importance of conformational steering of unmodified nucleotides in partly modified LNA and alpha-L-LNA sequences in relation to the unprecedented binding properties of LNA and alpha-L-LNA.

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Year:  2001        PMID: 11563053     DOI: 10.1081/NCN-100002312

Source DB:  PubMed          Journal:  Nucleosides Nucleotides Nucleic Acids        ISSN: 1525-7770            Impact factor:   1.381


  12 in total

Review 1.  Therapeutic potential of siRNA and DNAzymes in cancer.

Authors:  Hanuma Kumar Karnati; Ravi Shekar Yalagala; Rambabu Undi; Satya Ratan Pasupuleti; Ravi Kumar Gutti
Journal:  Tumour Biol       Date:  2014-08-23

2.  Chemical synthesis of LNA-2-thiouridine and its influence on stability and selectivity of oligonucleotide binding to RNA.

Authors:  Marta Carlucci; Elzbieta Kierzek; Anna Olejnik; Douglas H Turner; Ryszard Kierzek
Journal:  Biochemistry       Date:  2009-11-24       Impact factor: 3.162

3.  Synthesis and physical and physiological properties of 4'-thioRNA: application to post-modification of RNA aptamer toward NF-kappaB.

Authors:  Shuichi Hoshika; Noriaki Minakawa; Akira Matsuda
Journal:  Nucleic Acids Res       Date:  2004-07-19       Impact factor: 16.971

4.  Transcription factor decoy oligonucleotides modified with locked nucleic acids: an in vitro study to reconcile biostability with binding affinity.

Authors:  Rita Crinelli; Marzia Bianchi; Lucia Gentilini; Linda Palma; Mads D Sørensen; Torsten Bryld; Ravindra B Babu; Khalil Arar; Jesper Wengel; Mauro Magnani
Journal:  Nucleic Acids Res       Date:  2004-03-29       Impact factor: 16.971

5.  Expanding the design horizon of antisense oligonucleotides with alpha-L-LNA.

Authors:  Miriam Frieden; Signe M Christensen; Nikolaj D Mikkelsen; Christoph Rosenbohm; Charlotte A Thrue; Majken Westergaard; Henrik F Hansen; Henrik Ørum; Troels Koch
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

6.  Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids.

Authors:  Elzbieta Kierzek; Anna Pasternak; Karol Pasternak; Zofia Gdaniec; Ilyas Yildirim; Douglas H Turner; Ryszard Kierzek
Journal:  Biochemistry       Date:  2009-05-26       Impact factor: 3.162

7.  Development of a Real-Time Reverse Transcription-PCR Assay for Global Differentiation of Yellow Fever Virus Vaccine-Related Adverse Events from Natural Infections.

Authors:  Holly R Hughes; Brandy J Russell; Eric C Mossel; John Kayiwa; Julius Lutwama; Amy J Lambert
Journal:  J Clin Microbiol       Date:  2018-05-25       Impact factor: 5.948

8.  Development of Therapeutic-Grade Small Interfering RNAs by Chemical Engineering.

Authors:  Jesper B Bramsen; Jørgen Kjems
Journal:  Front Genet       Date:  2012-08-20       Impact factor: 4.599

9.  Efficient inhibition of HIV-1 expression by LNA modified antisense oligonucleotides and DNAzymes targeted to functionally selected binding sites.

Authors:  Martin R Jakobsen; Joost Haasnoot; Jesper Wengel; Ben Berkhout; Jørgen Kjems
Journal:  Retrovirology       Date:  2007-04-26       Impact factor: 4.602

10.  NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer.

Authors:  Isabelle Lebars; Tristan Richard; Carmelo Di Primo; Jean-Jacques Toulmé
Journal:  Nucleic Acids Res       Date:  2007-09-03       Impact factor: 16.971

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