Literature DB >> 11551776

More hydrogen bonds for the (structural) biologist.

M S Weiss1, M Brandl, J Sühnel, D Pal, R Hilgenfeld.   

Abstract

Why does a given protein structure form and why is this structure stable? These fundamental biochemical questions remain fascinating and challenging problems because the physical bases of the forces that govern protein structure, stability and folding are still not well understood. Now, a general concept of hydrogen bonding in proteins is emerging. This concept involves not only N-H and O-H donor groups, but also C-H, and not only N and O as acceptor groups, but also pi-systems. We postulate that the incorporation of the entirety of these interactions leads to a more complete description of the problem, and that this could provide new perspectives and possibly new answers.

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Year:  2001        PMID: 11551776     DOI: 10.1016/s0968-0004(01)01935-1

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  41 in total

1.  Surveying the manifold divergence of an entire protein class for statistical clues to underlying biochemical mechanisms.

Authors:  Andrew F Neuwald
Journal:  Stat Appl Genet Mol Biol       Date:  2011-08-04

2.  Direct detection of CH/pi interactions in proteins.

Authors:  Michael J Plevin; David L Bryce; Jérôme Boisbouvier
Journal:  Nat Chem       Date:  2010-05-02       Impact factor: 24.427

3.  Computational study on new natural polycyclic compounds of H1N1 influenza virus neuraminidase.

Authors:  Ye Wang; Di Wu; Dahai Yu; Zhiyong Wang; Li Tian; Yanyan Wang; Weiwei Han; Xuexun Fang
Journal:  J Mol Model       Date:  2012-01-27       Impact factor: 1.810

4.  Structural origin of weakly ordered nitroxide motion in spin-labeled proteins.

Authors:  Mark R Fleissner; Duilio Cascio; Wayne L Hubbell
Journal:  Protein Sci       Date:  2009-05       Impact factor: 6.725

5.  Influence of C-H...O interactions on the structural stability of β-lactamases.

Authors:  P Lavanya; Sudha Ramaiah; Anand Anbarasu
Journal:  J Biol Phys       Date:  2013-06-25       Impact factor: 1.365

6.  The three-dimensional structure of diaminopimelate decarboxylase from Mycobacterium tuberculosis reveals a tetrameric enzyme organisation.

Authors:  Simone Weyand; Georgia Kefala; Dmitri I Svergun; Manfred S Weiss
Journal:  J Struct Funct Genomics       Date:  2009-06-19

7.  Unconventional N-H…N Hydrogen Bonds Involving Proline Backbone Nitrogen in Protein Structures.

Authors:  R N V Krishna Deepak; Ramasubbu Sankararamakrishnan
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

8.  The environment of amide groups in protein-ligand complexes: H-bonds and beyond.

Authors:  Simona Cotesta; Martin Stahl
Journal:  J Mol Model       Date:  2005-12-13       Impact factor: 1.810

9.  3C protease of enterovirus 68: structure-based design of Michael acceptor inhibitors and their broad-spectrum antiviral effects against picornaviruses.

Authors:  Jinzhi Tan; Shyla George; Yuri Kusov; Markus Perbandt; Stefan Anemüller; Jeroen R Mesters; Helene Norder; Bruno Coutard; Céline Lacroix; Pieter Leyssen; Johan Neyts; Rolf Hilgenfeld
Journal:  J Virol       Date:  2013-02-06       Impact factor: 5.103

10.  Effects of tryptophan microenvironment, soluble domain, and vesicle size on the thermodynamics of membrane protein folding: lessons from the transmembrane protein OmpA.

Authors:  Katheryn M Sanchez; Jonathan E Gable; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2008-12-02       Impact factor: 3.162

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