Literature DB >> 11550924

Allele-sharing methods for estimation of population size.

H J Skaug1.   

Abstract

Genetic data are becoming increasingly important in ecology and conservation biology. This article presents a novel method for estimating population size from DNA profiles obtained from a random sample of individuals. The underlying idea is that the degree of biological relationship between individuals in the sample reflects the size of the population and that DNA profiles provide information about relatedness. A pseudolikelihood approach is taken, involving pairwise comparison of individuals. The main field of applications is seen to be catch data, and as an example, the method is applied to DNA profiles (10 microsatellite loci) from 334 North Atlantic minke whales. It is concluded that the sample size is too small for the method to give useful results. The question about the required sample size is investigated by simulation.

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Year:  2001        PMID: 11550924     DOI: 10.1111/j.0006-341x.2001.00750.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  7 in total

1.  Microsatellite loci and the complete mitochondrial DNA sequence characterized through next generation sequencing and de novo genome assembly for the critically endangered orange-bellied parrot, Neophema chrysogaster.

Authors:  Adam D Miller; Robert T Good; Rhys A Coleman; Melanie L Lancaster; Andrew R Weeks
Journal:  Mol Biol Rep       Date:  2012-11-01       Impact factor: 2.316

2.  Genotyping errors in a calibrated DNA register: implications for identification of individuals.

Authors:  Øystein A Haaland; Kevin A Glover; Bjørghild B Seliussen; Hans J Skaug
Journal:  BMC Genet       Date:  2011-04-20       Impact factor: 2.797

3.  Absolute abundance of southern bluefin tuna estimated by close-kin mark-recapture.

Authors:  Mark V Bravington; Peter M Grewe; Campbell R Davies
Journal:  Nat Commun       Date:  2016-11-14       Impact factor: 14.919

4.  Robustness of close-kin mark-recapture estimators to dispersal limitation and spatially varying sampling probabilities.

Authors:  Paul B Conn; Mark V Bravington; Shane Baylis; Jay M Ver Hoef
Journal:  Ecol Evol       Date:  2020-05-05       Impact factor: 2.912

5.  Population abundance in arctic grayling using genetics and close-kin mark-recapture.

Authors:  Samuel Prystupa; Gregory R McCracken; Robert Perry; Daniel E Ruzzante
Journal:  Ecol Evol       Date:  2021-04-02       Impact factor: 2.912

Review 6.  Advances and opportunities in malaria population genomics.

Authors:  Daniel E Neafsey; Aimee R Taylor; Bronwyn L MacInnis
Journal:  Nat Rev Genet       Date:  2021-04-08       Impact factor: 59.581

7.  Advancing the protection of marine life through genomics.

Authors:  Madeleine J H van Oppen; Melinda A Coleman
Journal:  PLoS Biol       Date:  2022-10-17       Impact factor: 9.593

  7 in total

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