Literature DB >> 11550797

Domain-domain communication in aminoacyl-tRNA synthetases.

R W Alexander1, P Schimmel.   

Abstract

Aminoacyl-tRNA synthetases are modular proteins, with domains that have distinct roles in the aminoacylation reaction. The catalytic core is responsible for aminoacyl adenylate formation and transfer of the amino acid to the 3' end of the bound transfer RNA (tRNA). Appended and inserted domains contact portions of the tRNA outside the acceptor site and contribute to the efficiency and specificity of aminoacylation. Some aminoacyl-tRNA synthetases also have distinct editing activities that are localized to unique domains. Efficient aminoacylation and editing require communication between RNA-binding and catalytic domains, and can be considered as a signal transduction system. Here, evidence for domain-domain communication in aminoacyl-tRNA synthetases is summarized, together with insights from structural analysis.

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Year:  2001        PMID: 11550797     DOI: 10.1016/s0079-6603(01)69050-0

Source DB:  PubMed          Journal:  Prog Nucleic Acid Res Mol Biol        ISSN: 0079-6603


  17 in total

1.  Trans-editing of mischarged tRNAs.

Authors:  Ivan Ahel; Dragana Korencic; Michael Ibba; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

2.  Tertiary structure base pairs between D- and TpsiC-loops of Escherichia coli tRNA(Leu) play important roles in both aminoacylation and editing.

Authors:  Xing Du; En-Duo Wang
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

3.  Two distinct domains of the beta subunit of Aquifex aeolicus leucyl-tRNA synthetase are involved in tRNA binding as revealed by a three-hybrid selection.

Authors:  Yong-Gang Zheng; Hui Wei; Chen Ling; Franck Martin; Gilbert Eriani; En-Duo Wang
Journal:  Nucleic Acids Res       Date:  2004-06-18       Impact factor: 16.971

4.  A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis.

Authors:  Amit Ghosh; Saraswathi Vishveshwara
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-26       Impact factor: 11.205

5.  Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetase.

Authors:  Thomas E Jones; Rebecca W Alexander; Tao Pan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

6.  Redox Activation of the Universally Conserved ATPase YchF by Thioredoxin 1.

Authors:  Liya Hannemann; Ida Suppanz; Qiaorui Ba; Katherine MacInnes; Friedel Drepper; Bettina Warscheid; Hans-Georg Koch
Journal:  Antioxid Redox Signal       Date:  2015-08-17       Impact factor: 8.401

7.  The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases.

Authors:  Satwik Kamtekar; W Dexter Kennedy; Jimin Wang; Constantinos Stathopoulos; Dieter Söll; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-10       Impact factor: 11.205

8.  A freestanding proofreading domain is required for protein synthesis quality control in Archaea.

Authors:  Dragana Korencic; Ivan Ahel; James Schelert; Meik Sacher; Benfang Ruan; Constantinos Stathopoulos; Paul Blum; Michael Ibba; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-06       Impact factor: 11.205

9.  Evolutionary basis for the coupled-domain motions in Thermus thermophilus leucyl-tRNA synthetase.

Authors:  Kristina Mary Ellen Weimer; Brianne Leigh Shane; Michael Brunetto; Sudeep Bhattacharyya; Sanchita Hati
Journal:  J Biol Chem       Date:  2009-02-02       Impact factor: 5.157

10.  In vitro assays for the determination of aminoacyl-tRNA synthetase editing activity.

Authors:  Kathryn E Splan; Karin Musier-Forsyth; Michal T Boniecki; Susan A Martinis
Journal:  Methods       Date:  2008-02       Impact factor: 3.608

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