Literature DB >> 11549312

The sheep genome contributes to localization of control elements in a human gene with complex regulatory mechanisms.

N Mouchel1, S J Tebbutt, F C Broackes-Carter, V Sahota, T Summerfield, D J Gregory, A Harris.   

Abstract

Genes that show complex tissue-specific and temporal control by regulatory elements located outside their promoters present a considerable challenge to identify the sequences involved. The rapid accumulation of genomic sequence information for a number of species has enabled a comparative phylogenetic approach to find important regulatory elements. For some genes, which show a similar pattern of expression in humans and rodents, genomic sequence information for these two species may be sufficient. Others, such as the cystic fibrosis transmembrane conductance regulator (CFTR) gene, show significant divergence in expression patterns between mouse and human, necessitating phylogenetic approaches involving additional species. The ovine CFTR gene has a temporal and spatial expression pattern that is very similar to that of human CFTR. Comparative genomic sequence analysis of ovine and human CFTR identified high levels of homology between the core elements in several potential regulatory elements defined as DNase I hypersensitive sites in human CFTR. These data provide a case for the power of an artiodactyl genome to contribute to the understanding of human genetic disease.

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Year:  2001        PMID: 11549312     DOI: 10.1006/geno.2001.6603

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  5 in total

1.  Discovery of regulatory elements by a computational method for phylogenetic footprinting.

Authors:  Mathieu Blanchette; Martin Tompa
Journal:  Genome Res       Date:  2002-05       Impact factor: 9.043

2.  HNF1alpha is involved in tissue-specific regulation of CFTR gene expression.

Authors:  Nathalie Mouchel; Sytse A Henstra; Victoria A McCarthy; Sarah H Williams; Marios Phylactides; Ann Harris
Journal:  Biochem J       Date:  2004-03-15       Impact factor: 3.857

3.  Alternative splicing of the ovine CFTR gene.

Authors:  Fiona C Broackes-Carter; Sarah H Williams; Pei Ling Wong; Nathalie Mouchel; Ann Harris
Journal:  Mamm Genome       Date:  2003-11       Impact factor: 2.957

Review 4.  Farm animal genomics and informatics: an update.

Authors:  Ahmed Fadiel; Ifeanyi Anidi; Kenneth D Eichenbaum
Journal:  Nucleic Acids Res       Date:  2005-11-07       Impact factor: 16.971

Review 5.  Gene therapy progress and prospects: cystic fibrosis.

Authors:  U Griesenbach; S Ferrari; D M Geddes; E W F W Alton
Journal:  Gene Ther       Date:  2002-10       Impact factor: 5.250

  5 in total

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