Literature DB >> 11540495

Statistical properties of DNA sequences.

C K Peng1, S V Buldyrev, A L Goldberger, S Havlin, R N Mantegna, M Simons, H E Stanley.   

Abstract

We review evidence supporting the idea that the DNA sequence in genes containing non-coding regions is correlated, and that the correlation is remarkably long range--indeed, nucleotides thousands of base pairs distant are correlated. We do not find such a long-range correlation in the coding regions of the gene. We resolve the problem of the "non-stationarity" feature of the sequence of base pairs by applying a new algorithm called detrended fluctuation analysis (DFA). We address the claim of Voss that there is no difference in the statistical properties of coding and non-coding regions of DNA by systematically applying the DFA algorithm, as well as standard FFT analysis, to every DNA sequence (33301 coding and 29453 non-coding) in the entire GenBank database. Finally, we describe briefly some recent work showing that the non-coding sequences have certain statistical features in common with natural and artificial languages. Specifically, we adapt to DNA the Zipf approach to analyzing linguistic texts. These statistical properties of non-coding sequences support the possibility that non-coding regions of DNA may carry biological information.

Entities:  

Keywords:  NASA Discipline Cardiopulmonary; Non-NASA Center

Mesh:

Substances:

Year:  1995        PMID: 11540495     DOI: 10.1016/0378-4371(95)00247-5

Source DB:  PubMed          Journal:  Physica A        ISSN: 0378-4371            Impact factor:   3.263


  21 in total

1.  Effect of extreme data loss on long-range correlated and anticorrelated signals quantified by detrended fluctuation analysis.

Authors:  Qianli D Y Ma; Ronny P Bartsch; Pedro Bernaola-Galván; Mitsuru Yoneyama; Plamen Ch Ivanov
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-02

2.  Automatic detection of sleep apnea based on EEG detrended fluctuation analysis and support vector machine.

Authors:  Jing Zhou; Xiao-ming Wu; Wei-jie Zeng
Journal:  J Clin Monit Comput       Date:  2015-02-08       Impact factor: 2.502

Review 3.  Informatics challenges in structured RNA.

Authors:  Alain Laederach
Journal:  Brief Bioinform       Date:  2007-07-04       Impact factor: 11.622

4.  Metabolic imaging in multiple time scales.

Authors:  V Krishnan Ramanujan
Journal:  Methods       Date:  2013-09-04       Impact factor: 3.608

5.  The Effect of Walking Speed on Gait Variability in Healthy Young, Middle-aged and Elderly Individuals.

Authors:  J H Chien; J Yentes; N Stergiou; K-C Siu
Journal:  J Phys Act Nutr Rehabil       Date:  2015-05-14

6.  Structural effects of linkage disequilibrium on the transcriptome.

Authors:  Joshua S Martin; Matthew Halvorsen; Lauren Davis-Neulander; Justin Ritz; Chetna Gopinath; Arthur Beauregard; Alain Laederach
Journal:  RNA       Date:  2011-11-22       Impact factor: 4.942

7.  Detrended fluctuation analysis of intracranial pressure predicts outcome following traumatic brain injury.

Authors:  Robert L Burr; Catherine J Kirkness; Pamela H Mitchell
Journal:  IEEE Trans Biomed Eng       Date:  2008-11       Impact factor: 4.538

8.  Human erythrocyte flickering: temperature, ATP concentration, water transport, and cell aging, plus a computer simulation.

Authors:  David Szekely; Tsz Wai Yau; Philip W Kuchel
Journal:  Eur Biophys J       Date:  2009-05-31       Impact factor: 1.733

9.  Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats.

Authors:  Vladimir Paar; Nenad Pavin; Ivan Basar; Marija Rosandić; Matko Gluncić; Nils Paar
Journal:  BMC Bioinformatics       Date:  2008-11-03       Impact factor: 3.169

10.  Highly comparative time-series analysis: the empirical structure of time series and their methods.

Authors:  Ben D Fulcher; Max A Little; Nick S Jones
Journal:  J R Soc Interface       Date:  2013-04-03       Impact factor: 4.118

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