Literature DB >> 11539495

Fractal geometry of bean root systems: correlations between spatial and fractal dimension.

K L Nielsen1, J P Lynch, H N Weiss.   

Abstract

An obstacle to the study of root architecture is the difficulty of measuring and quantifying the three-dimensional configuration of roots in soil. The objective of this work was to determine if fractal geometry might be useful in estimating the three-dimensional complexity of root architecture from more accessible measurements. A set of results called projection theorems predict that the fractal dimension (FD) of a projection of a root system should be identical to the FD of roots in three-dimensional space (three-dimensional FD). To test this prediction we employed SimRoot, an explicit geometric simulation model of root growth derived from empirical measurements of common bean (Phaseolus vulgaris L.). We computed the three-dimensional FD, FD of horizontal plane intercepts (planar FD), FD of vertical line intercepts (linear FD), and FD of orthogonal projections onto planes (projected FD). Three-dimensional FD was found to differ from corresponding projected FD, suggesting that the analysis of roots grown in a narrow space or excavated and flattened prior to analysis is problematic. A log-linear relationship was found between FD of roots and spatial dimension. This log-linear relationship suggests that the three-dimensional FD of root systems may be accurately estimated from excavations and tracing of root intersections on exposed planes.

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Year:  1997        PMID: 11539495

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  10 in total

1.  Theoretical evidence for the functional benefit of root cortical aerenchyma in soils with low phosphorus availability.

Authors:  Johannes A Postma; Jonathan P Lynch
Journal:  Ann Bot       Date:  2010-10-22       Impact factor: 4.357

2.  Modelling applicability of fractal analysis to efficiency of soil exploration by roots.

Authors:  Thomas C Walk; Erik Van Erp; Jonathan P Lynch
Journal:  Ann Bot       Date:  2004-05-14       Impact factor: 4.357

3.  Branching patterns of root systems: quantitative analysis of the diversity among dicotyledonous species.

Authors:  Loïc Pagès
Journal:  Ann Bot       Date:  2014-07-25       Impact factor: 4.357

4.  Image-based high-throughput field phenotyping of crop roots.

Authors:  Alexander Bucksch; James Burridge; Larry M York; Abhiram Das; Eric Nord; Joshua S Weitz; Jonathan P Lynch
Journal:  Plant Physiol       Date:  2014-09-03       Impact factor: 8.340

5.  Factors influencing real time internal structural visualization and dynamic process monitoring in plants using synchrotron-based phase contrast X-ray imaging.

Authors:  Chithra Karunakaran; Rachid Lahlali; Ning Zhu; Adam M Webb; Marina Schmidt; Kyle Fransishyn; George Belev; Tomasz Wysokinski; Jeremy Olson; David M L Cooper; Emil Hallin
Journal:  Sci Rep       Date:  2015-07-17       Impact factor: 4.379

6.  Box-Counting Dimension Revisited: Presenting an Efficient Method of Minimizing Quantization Error and an Assessment of the Self-Similarity of Structural Root Systems.

Authors:  Martin Bouda; Joshua S Caplan; James E Saiers
Journal:  Front Plant Sci       Date:  2016-02-18       Impact factor: 5.753

7.  OpenSimRoot: widening the scope and application of root architectural models.

Authors:  Johannes A Postma; Christian Kuppe; Markus R Owen; Nathan Mellor; Marcus Griffiths; Malcolm J Bennett; Jonathan P Lynch; Michelle Watt
Journal:  New Phytol       Date:  2017-06-27       Impact factor: 10.151

8.  Root architecture simulation improves the inference from seedling root phenotyping towards mature root systems.

Authors:  Jiangsan Zhao; Gernot Bodner; Boris Rewald; Daniel Leitner; Kerstin A Nagel; Alireza Nakhforoosh
Journal:  J Exp Bot       Date:  2017-02-01       Impact factor: 6.992

9.  Alpha shapes: determining 3D shape complexity across morphologically diverse structures.

Authors:  James D Gardiner; Julia Behnsen; Charlotte A Brassey
Journal:  BMC Evol Biol       Date:  2018-12-05       Impact factor: 3.260

10.  Using clear plastic CD cases as low-cost mini-rhizotrons to phenotype root traits.

Authors:  Steven T Cassidy; Audrey A Burr; Rachel A Reeb; Ana L Melero Pardo; Kamron D Woods; Corlett W Wood
Journal:  Appl Plant Sci       Date:  2020-04-19       Impact factor: 1.936

  10 in total

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