Literature DB >> 11531698

Construction and characterization of BAC libraries for three fish species; rainbow trout, carp and tilapia.

T Katagiri1, S Asakawa, S Minagawa, N Shimizu, I Hirono, T Aoki.   

Abstract

Bacterial artificial chromosome (BAC) libraries are important tools for genomic research. We have constructed seven genomic BAC libraries from three fish species, rainbow trout (Oncorhynchus mykiss), carp (Cyprinus carpio) and tilapia (Oreochromis niloticus). The two rainbow trout BAC libraries have average insert sizes of 58 and 110 kb. The average size of inserts in the carp BAC library is 160 kb. The average insert sizes of the four tilapia BAC libraries are 65, 105, 145 and 194 kb, respectively. These libraries represent good coverage of each genome (2-64 x coverage). The libraries can be screened by conventional colony hybridization and provide a starting point for the construction of high-density filtres or polymerase chain reaction (PCR) screening approaches. These BAC libraries will facilitate the positional cloning of quantitative trait loci (QTLs) for a variety of economically important traits in these species.

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Year:  2001        PMID: 11531698     DOI: 10.1046/j.1365-2052.2001.00764.x

Source DB:  PubMed          Journal:  Anim Genet        ISSN: 0268-9146            Impact factor:   3.169


  26 in total

1.  Genomic organization and comparative chromosome mapping of the U1 snRNA gene in cichlid fish, with an emphasis in Oreochromis niloticus.

Authors:  D C Cabral-de-Mello; G T Valente; R T Nakajima; C Martins
Journal:  Chromosome Res       Date:  2012-01-11       Impact factor: 5.239

2.  Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes.

Authors:  Shaolin Wang; Peng Xu; Jim Thorsen; Baoli Zhu; Pieter J de Jong; Geoff Waldbieser; Huseyin Kucuktas; Zhanjiang Liu
Journal:  Mar Biotechnol (NY)       Date:  2007-08-02       Impact factor: 3.619

3.  Construction and characterization of two bacterial artificial chromosome libraries of grass carp.

Authors:  Songhun Jang; Hang Liu; Jianguo Su; Feng Dong; Feng Xiong; Lanjie Liao; Yaping Wang; Zuoyan Zhu
Journal:  Mar Biotechnol (NY)       Date:  2010-03-26       Impact factor: 3.619

4.  Isolation and physical mapping of sex-linked AFLP markers in nile tilapia (Oreochromis niloticus L.).

Authors:  M Tariq Ezaz; Simon C Harvey; Chuta Boonphakdee; Alan J Teale; Brendan J McAndrew; David J Penman
Journal:  Mar Biotechnol (NY)       Date:  2004-08-24       Impact factor: 3.619

5.  A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes.

Authors:  Yniv Palti; Carine Genet; Guangtu Gao; Yuqin Hu; Frank M You; Mekki Boussaha; Caird E Rexroad; Ming-Cheng Luo
Journal:  Mar Biotechnol (NY)       Date:  2011-11-19       Impact factor: 3.619

6.  Identification and characterization of gene expression involved in the coloration of cichlid fish using microarray and qRT-PCR approaches.

Authors:  Helen M Gunter; Céline Clabaut; Walter Salzburger; Axel Meyer
Journal:  J Mol Evol       Date:  2011-01-26       Impact factor: 2.395

7.  Mhc class I genes of the cichlid fish Oreochromis niloticus.

Authors:  Akie Sato; Roman Dongak; Li Hao; Naoko Takezaki; Seikou Shintani; Takashi Aoki; Jan Klein
Journal:  Immunogenetics       Date:  2006-10-11       Impact factor: 2.846

8.  Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus).

Authors:  Lucile Soler; Matthew A Conte; Takayuki Katagiri; Aimee E Howe; Bo-Young Lee; Chris Amemiya; Andrew Stuart; Carole Dossat; Julie Poulain; Jeremy Johnson; Federica Di Palma; Kerstin Lindblad-Toh; Jean-Francois Baroiller; Helena D'Cotta; Catherine Ozouf-Costaz; Thomas D Kocher
Journal:  BMC Genomics       Date:  2010-11-16       Impact factor: 3.969

9.  Construction of two BAC libraries from half-smooth tongue sole Cynoglossus semilaevis and identification of clones containing candidate sex-determination genes.

Authors:  Chang-Wei Shao; Song-Lin Chen; Chantel F Scheuring; Jian-Yong Xu; Zhen-Xia Sha; Xiao-Li Dong; Hong-Bin Zhang
Journal:  Mar Biotechnol (NY)       Date:  2009-12-03       Impact factor: 3.619

10.  A first generation BAC-based physical map of the rainbow trout genome.

Authors:  Yniv Palti; Ming-Cheng Luo; Yuqin Hu; Carine Genet; Frank M You; Roger L Vallejo; Gary H Thorgaard; Paul A Wheeler; Caird E Rexroad
Journal:  BMC Genomics       Date:  2009-10-08       Impact factor: 3.969

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