Literature DB >> 11531695

Transcriptome of channel catfish (Ictalurus punctatus): initial analysis of genes and expression profiles of the head kidney.

D Cao1, A Kocabas, Z Ju, A Karsi, P Li, A Patterson, Z Liu.   

Abstract

Analysis of expressed sequence tags (ESTs) is an efficient approach for gene discovery, expression profiling, and development of resources useful for functional genomics studies. As part of the transcriptome analysis in channel catfish (Ictalurus punctatus), we have conducted EST analysis using a cDNA library made from the head kidney. We analysed 2228 EST clones. Orthologues were established for 1495 (67.1%) clones representing 748 genes, of which 545 (36.5%) clones were singletons. The remaining 733 (32.9%) clones represent unknown gene clones, for which the number of genes has not yet been determined.

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Year:  2001        PMID： 11531695     DOI： 10.1046/j.1365-2052.2001.00753.x

Source DB:  PubMed          Journal:  Anim Genet        ISSN： 0268-9146            Impact factor:   3.169


  23 in total

1.  Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags.

Authors:  Chongbo He; Eric Peatman; Puttharat Baoprasertkul; Huseyin Kucuktas; Zhanjiang Liu
Journal:  Immunogenetics       Date:  2004-08-07       Impact factor: 2.846

2.  Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes.

Authors:  Shaolin Wang; Peng Xu; Jim Thorsen; Baoli Zhu; Pieter J de Jong; Geoff Waldbieser; Huseyin Kucuktas; Zhanjiang Liu
Journal:  Mar Biotechnol (NY)       Date:  2007-08-02       Impact factor: 3.619

3.  Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers.

Authors:  Huseyin Kucuktas; Shaolin Wang; Ping Li; Chongbo He; Peng Xu; Zhenxia Sha; Hong Liu; Yanliang Jiang; Puttharat Baoprasertkul; Benjaporn Somridhivej; Yaping Wang; Jason Abernathy; Ximing Guo; Lei Liu; William Muir; Zhanjiang Liu
Journal:  Genetics       Date:  2009-01-26       Impact factor: 4.562

4.  In silico identification and expression analysis of 12 novel CC chemokines in catfish.

Authors:  Eric Peatman; Baolong Bao; Puttharat Baoprasertkul; Zhanjiang Liu
Journal:  Immunogenetics       Date:  2005-07-07       Impact factor: 2.846

5.  Toll-like receptor 3 and TICAM genes in catfish: species-specific expression profiles following infection with Edwardsiella ictaluri.

Authors:  Puttharat Baoprasertkul; Eric Peatman; Benjaporn Somridhivej; Zhanjiang Liu
Journal:  Immunogenetics       Date:  2006-09-13       Impact factor: 2.846

6.  The cytochrome P450 genes of channel catfish: their involvement in disease defense responses as revealed by meta-analysis of RNA-Seq data sets.

Authors:  Jiaren Zhang; Jun Yao; Ruijia Wang; Yu Zhang; Shikai Liu; Luyang Sun; Yanliang Jiang; Jianbin Feng; Nannan Liu; David Nelson; Geoff Waldbieser; Zhanjiang Liu
Journal:  Biochim Biophys Acta       Date:  2014-04-27

7.  Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus).

Authors:  Jerry Serapion; Huseyin Kucuktas; Jinian Feng; Zhanjiang Liu
Journal:  Mar Biotechnol (NY)       Date:  2004-05-13       Impact factor: 3.619

8.  Transcriptome analysis of head kidney in grass carp and discovery of immune-related genes.

Authors:  Jin Chen; Cai Li; Rong Huang; Fukuan Du; Lanjie Liao; Zuoyan Zhu; Yaping Wang
Journal:  BMC Vet Res       Date:  2012-07-09       Impact factor: 2.741

9.  Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies.

Authors:  Shaolin Wang; Eric Peatman; Jason Abernathy; Geoff Waldbieser; Erika Lindquist; Paul Richardson; Susan Lucas; Mei Wang; Ping Li; Jyothi Thimmapuram; Lei Liu; Deepika Vullaganti; Huseyin Kucuktas; Christopher Murdock; Brian C Small; Melanie Wilson; Hong Liu; Yanliang Jiang; Yoona Lee; Fei Chen; Jianguo Lu; Wenqi Wang; Peng Xu; Benjaporn Somridhivej; Puttharat Baoprasertkul; Jonas Quilang; Zhenxia Sha; Baolong Bao; Yaping Wang; Qun Wang; Tomokazu Takano; Samiran Nandi; Shikai Liu; Lilian Wong; Ludmilla Kaltenboeck; Sylvie Quiniou; Eva Bengten; Norman Miller; John Trant; Daniel Rokhsar; Zhanjiang Liu
Journal:  Genome Biol       Date:  2010-01-22       Impact factor: 13.583

10.  Comparative analysis of catfish BAC end sequences with the zebrafish genome.

Authors:  Hong Liu; Yanliang Jiang; Shaolin Wang; Parichart Ninwichian; Benjaporn Somridhivej; Peng Xu; Jason Abernathy; Huseyin Kucuktas; Zhanjiang Liu
Journal:  BMC Genomics       Date:  2009-12-10       Impact factor: 3.969
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