Literature DB >> 11524382

Easier threading through web-based comparisons and cross-validations.

D Douguet1, G Labesse.   

Abstract

UNLABELLED: We have developed a WWW server for the integration and comparison of protein structure predictions performed by five different servers. Users submit an amino acid sequence to a selected set of these prediction methods. Results are gathered on a web-based page in order to facilitate comparison and analysis. All the alignments are further evaluated through a common threading tool making their comparisons easier. AVAILABILITY: The meta-server is available free at http://www.infobiosud.cnrs.fr/bioserver SUPPLEMENTARY INFORMATION: http://www.infobiosud.cnrs.fr/bioserver/hah1.html

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Year:  2001        PMID: 11524382     DOI: 10.1093/bioinformatics/17.8.752

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  24 in total

1.  Structural and nucleotide-binding properties of YajQ and YnaF, two Escherichia coli proteins of unknown function.

Authors:  Cosmin Saveanu; Simona Miron; Tudor Borza; Constantin T Craescu; Gilles Labesse; Cristina Gagyi; Aurel Popescu; Francis Schaeffer; Abdelkader Namane; Christine Laurent-Winter; Octavian Bârzu; Anne-Marie Gilles
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

Review 2.  Bioinformatics methods to predict protein structure and function. A practical approach.

Authors:  Yvonne J K Edwards; Amanda Cottage
Journal:  Mol Biotechnol       Date:  2003-02       Impact factor: 2.695

3.  Deimination is regulated at multiple levels including auto-deimination of peptidylarginine deiminases.

Authors:  Marie-Claire Méchin; Fanny Coudane; Véronique Adoue; Jacques Arnaud; Hélène Duplan; Marie Charveron; Anne-Marie Schmitt; Hidenari Takahara; Guy Serre; Michel Simon
Journal:  Cell Mol Life Sci       Date:  2010-01-29       Impact factor: 9.261

4.  Common structural requirements for heptahelical domain function in class A and class C G protein-coupled receptors.

Authors:  Virginie Binet; Béatrice Duthey; Jennifer Lecaillon; Claire Vol; Julie Quoyer; Gilles Labesse; Jean-Philippe Pin; Laurent Prézeau
Journal:  J Biol Chem       Date:  2007-02-19       Impact factor: 5.157

5.  A 20-amino acid module of protein kinase C{epsilon} involved in translocation and selective targeting at cell-cell contacts.

Authors:  Barthélémy Diouf; Alejandra Collazos; Gilles Labesse; Françoise Macari; Armelle Choquet; Philippe Clair; Cécile Gauthier-Rouvière; Nathalie C Guérineau; Philippe Jay; Frédéric Hollande; Dominique Joubert
Journal:  J Biol Chem       Date:  2009-05-08       Impact factor: 5.157

6.  An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP.

Authors:  Magali Siaut; Cécile Zaros; Emilie Levivier; Maria-Laura Ferri; Magali Court; Michel Werner; Isabelle Callebaut; Pierre Thuriaux; André Sentenac; Christine Conesa
Journal:  Mol Cell Biol       Date:  2003-01       Impact factor: 4.272

7.  Black mamba venom peptides target acid-sensing ion channels to abolish pain.

Authors:  Sylvie Diochot; Anne Baron; Miguel Salinas; Dominique Douguet; Sabine Scarzello; Anne-Sophie Dabert-Gay; Delphine Debayle; Valérie Friend; Abdelkrim Alloui; Michel Lazdunski; Eric Lingueglia
Journal:  Nature       Date:  2012-10-03       Impact factor: 49.962

8.  MOWServ: a web client for integration of bioinformatic resources.

Authors:  Sergio Ramírez; Antonio Muñoz-Mérida; Johan Karlsson; Maximiliano García; Antonio J Pérez-Pulido; M Gonzalo Claros; Oswaldo Trelles
Journal:  Nucleic Acids Res       Date:  2010-06-04       Impact factor: 16.971

9.  Antimicrobial peptide-like genes in Nasonia vitripennis: a genomic perspective.

Authors:  Caihuan Tian; Bin Gao; Qi Fang; Gongyin Ye; Shunyi Zhu
Journal:  BMC Genomics       Date:  2010-03-19       Impact factor: 3.969

10.  @TOME-2: a new pipeline for comparative modeling of protein-ligand complexes.

Authors:  Jean-Luc Pons; Gilles Labesse
Journal:  Nucleic Acids Res       Date:  2009-05-13       Impact factor: 16.971

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