Literature DB >> 11524381

Structure prediction meta server.

J M Bujnicki1, A Elofsson, D Fischer, L Rychlewski.   

Abstract

UNLABELLED: The Structure Prediction Meta Server offers a convenient way for biologists to utilize various high quality structure prediction servers available worldwide. The meta server translates the results obtained from remote services into uniform format, which are consequently used to request a jury prediction from a remote consensus server Pcons. AVAILABILITY: The structure prediction meta server is freely available at http://BioInfo.PL/meta/, some remote servers have however restrictions for non-academic users, which are respected by the meta server. SUPPLEMENTARY INFORMATION: Results of several sessions of the CAFASP and LiveBench programs for assessment of performance of fold-recognition servers carried out via the meta server are available at http://BioInfo.PL/services.html.

Mesh：

Substances：

Year:  2001        PMID： 11524381     DOI： 10.1093/bioinformatics/17.8.750

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  61 in total

Review 1.  Bioinformatics methods to predict protein structure and function. A practical approach.

Authors:  Yvonne J K Edwards; Amanda Cottage
Journal:  Mol Biotechnol       Date:  2003-02       Impact factor: 2.695

2.  Conservation of structure and function among tyrosine recombinases: homology-based modeling of the lambda integrase core-binding domain.

Authors:  Brian M Swalla; Richard I Gumport; Jeffrey F Gardner
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

3.  ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.

Authors:  Pål Puntervoll; Rune Linding; Christine Gemünd; Sophie Chabanis-Davidson; Morten Mattingsdal; Scott Cameron; David M A Martin; Gabriele Ausiello; Barbara Brannetti; Anna Costantini; Fabrizio Ferrè; Vincenza Maselli; Allegra Via; Gianni Cesareni; Francesca Diella; Giulio Superti-Furga; Lucjan Wyrwicz; Chenna Ramu; Caroline McGuigan; Rambabu Gudavalli; Ivica Letunic; Peer Bork; Leszek Rychlewski; Bernhard Küster; Manuela Helmer-Citterich; William N Hunter; Rein Aasland; Toby J Gibson
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

4.  Three monophyletic superfamilies account for the majority of the known glycosyltransferases.

Authors:  Jing Liu; Arcady Mushegian
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

5.  Detection of reliable and unexpected protein fold predictions using 3D-Jury.

Authors:  Krzysztof Ginalski; Leszek Rychlewski
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  GeneSilico protein structure prediction meta-server.

Authors:  Michal A Kurowski; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

7.  Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family.

Authors:  Tong Liu; Ana Rojas; Yuzhen Ye; Adam Godzik
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

8.  Interactions between plant RING-H2 and plant-specific NAC (NAM/ATAF1/2/CUC2) proteins: RING-H2 molecular specificity and cellular localization.

Authors:  Krestine Greve; Tanja La Cour; Michael K Jensen; Flemming M Poulsen; Karen Skriver
Journal:  Biochem J       Date:  2003-04-01       Impact factor: 3.857

9.  Detecting distant homology with Meta-BASIC.

Authors:  Krzysztof Ginalski; Marcin von Grotthuss; Nick V Grishin; Leszek Rychlewski
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

10.  Identification of differentially expressed cDNA sequences in ovaries of sexual and apomictic plants of Brachiaria brizantha.

Authors:  Júlio C M Rodrigues; Gláucia B Cabral; Diva M A Dusi; Luciane V de Mello; Daniel J Rigden; Vera T C Carneiro
Journal:  Plant Mol Biol       Date:  2003-12       Impact factor: 4.076
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.