Literature DB >> 11524375

Genotype transposer: automated genotype manipulation for linkage disequilibrium analysis.

D G Cox1, F Canzian.   

Abstract

UNLABELLED: The purpose of this work is to provide the modern molecular geneticist with tools to perform more efficient and more accurate analysis of the genotype data they produce. By using Microsoft Excel macros written in Visual Basic, we can translate genotype data into a form readable by the versatile software 'Arlequin', read the Arlequin output, calculate statistics of linkage disequilibrium, and put the results in a format for viewing with the software 'GOLD'. AVAILABILITY: The software is available by FTP at: ftp://xcsg.iarc.fr/cox/Genotype_Transposer/. SUPPLEMENTARY INFORMATION: Detailed instruction and examples are available at: ftp://xcsg.iarc.fr/cox/Genotype&_Transposer/. Arlequin is available at: http://lgb.unige.ch/arlequin/. GOLD is available at: http://www.well.ox.ac.uk/asthma/GOLD/.

Mesh：

Year:  2001        PMID： 11524375     DOI： 10.1093/bioinformatics/17.8.738

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  14 in total

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4.  Genetic polymorphisms in telomere pathway genes, telomere length, and breast cancer survival.

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5.  Multiple genetic variants in telomere pathway genes and breast cancer risk.

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8.  Choline metabolism and risk of breast cancer in a population-based study.

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Journal:  FASEB J       Date:  2008-01-29       Impact factor: 5.191

9.  Genetic variants in the RELN gene are associated with otosclerosis in multiple European populations.

Authors:  Isabelle Schrauwen; Megan Ealy; Erik Fransen; Kathleen Vanderstraeten; Melissa Thys; Nicole C Meyer; Marcel Cosgarea; Alex Huber; Manuela Mazzoli; Markus Pfister; Richard J H Smith; Guy Van Camp
Journal:  Hum Genet       Date:  2009-10-22       Impact factor: 4.132

10.  Genetic variation in telomere maintenance genes, telomere length and breast cancer risk.

Authors:  Jing Shen; Mary Beth Terry; Yuyan Liao; Irina Gurvich; Qiao Wang; Ruby T Senie; Regina M Santella
Journal:  PLoS One       Date:  2012-09-06       Impact factor: 3.240
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