Literature DB >> 11522836

Characterization of a multi-functional metal-mediated nuclease by MALDI-TOF mass spectrometry.

U Puapaiboon1, J Jai-Nhuknan, J A Cowan.   

Abstract

Mass spectrometric analysis of reaction products allows simultaneous characterization of activities mediated by multifunctional enzymes. By use of MALDI-TOF mass spectrometry, the relative influence of magnesium and manganese promoted exonuclease and phosphatase activities of Esherichia coli exonuclease III have been quantitatively measured, offering a rapid and sensitive alternative to radioactivity quantification and gel electrophoresis procedures for determination of reaction rate constants. Manganese is found to promote higher levels of exonuclease activity, which could be a source of mutagenic effects if this ion were selected as the natural cofactor. Several potential applications of these methods to quantitative studies of DNA repair chemistry are also described.

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Year:  2001        PMID: 11522836      PMCID: PMC55896          DOI: 10.1093/nar/29.17.3652

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  26 in total

1.  Metal Activation of Enzymes in Nucleic Acid Biochemistry.

Authors:  J. A. Cowan
Journal:  Chem Rev       Date:  1998-05-07       Impact factor: 60.622

2.  Investigation of enzyme kinetics using quench-flow techniques with MALDI-TOF mass spectrometry.

Authors:  C T Houston; W P Taylor; T S Widlanski; J P Reilly
Journal:  Anal Chem       Date:  2000-07-15       Impact factor: 6.986

3.  ENZYMATIC SYNTHESIS OF DEOXYRIBONUCLEIC ACID. XIV. FURTHER PURIFICATION AND PROPERTIES OF DEOXYRIBONUCLEIC ACID POLYMERASE OF ESCHERICHIA COLI.

Authors:  C C RICHARDSON; C L SCHILDKRAUT; H V APOSHIAN; A KORNBERG
Journal:  J Biol Chem       Date:  1964-01       Impact factor: 5.157

4.  Analysis of polymerase chain reaction-amplified DNA products by mass spectrometry using matrix-assisted laser desorption and electrospray: current status.

Authors:  M J Doktycz; G B Hurst; S Habibi-Goudarzi; S A McLuckey; K Tang; C H Chen; M Uziel; K B Jacobson; R P Woychik; M V Buchanan
Journal:  Anal Biochem       Date:  1995-09-20       Impact factor: 3.365

5.  Mutants of Escherichia coli with altered deoxyribonucleases. I. Isolation and characterization of mutants for exonuclease 3.

Authors:  C Milcarek; B Weiss
Journal:  J Mol Biol       Date:  1972-07-21       Impact factor: 5.469

6.  On the activities of Escherichia coli exonuclease III.

Authors:  J D Hoheisel
Journal:  Anal Biochem       Date:  1993-03       Impact factor: 3.365

Review 7.  Repair of oxidative damage to DNA: enzymology and biology.

Authors:  B Demple; L Harrison
Journal:  Annu Rev Biochem       Date:  1994       Impact factor: 23.643

8.  3'-blocking damage of DNA as a mutagenic lesion caused by hydrogen peroxide in Escherichia coli.

Authors:  T Takemoto; Q M Zhang; Y Matsumoto; S Mito; T Izumi; H Ikehata; S Yonei
Journal:  J Radiat Res       Date:  1998-06       Impact factor: 2.724

9.  Determination of human DNA polymerase utilization for the repair of a model ionizing radiation-induced DNA strand break lesion in a defined vector substrate.

Authors:  T A Winters; P S Russell; M Kohli; M E Dar; R D Neumann; T J Jorgensen
Journal:  Nucleic Acids Res       Date:  1999-06-01       Impact factor: 16.971

10.  Atypical abasic sites generated by neocarzinostatin at sequence-specific cytidylate residues in oligodeoxynucleotides.

Authors:  L S Kappen; C Q Chen; I H Goldberg
Journal:  Biochemistry       Date:  1988-06-14       Impact factor: 3.162

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  2 in total

Review 1.  Techniques used in studies of epigenome dysregulation due to aberrant DNA methylation: an emphasis on fetal-based adult diseases.

Authors:  Shuk-mei Ho; Wan-yee Tang
Journal:  Reprod Toxicol       Date:  2007-01-19       Impact factor: 3.143

2.  Cleavage reactions of the complex ions derived from self-complementary deoxydinucleotides and alkali-metal ions using positive ion electrospray ionization with tandem mass spectrometry.

Authors:  Yun Xiang; Zeper Abliz; Mitsuo Takayama
Journal:  J Am Soc Mass Spectrom       Date:  2004-05       Impact factor: 3.109

  2 in total

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