Literature DB >> 11512764

ATOMS: crystallography for the X-ray absorption spectroscopist.

B Ravel1.   

Abstract

ATOMS is a user application providing crystallographic functionality useful to x-ray absorption spectroscopists. ATOMS is also a set of reusable, object-oriented software modules written in the Perl programming language providing crystallographic functionality and access to databases of absorption coefficients and anomalous scattering factors. The main use of the ATOMS program is to generate input data for the ab initio, multiple scattering, x-ray absorption spectroscopy code FEFF. However the code offers many additional features, including useful calculations involving absorption coefficients and simulations of Diffraction Anomalous Fine-Structure (DAFS) spectra. Command line, graphical, and web-based interfaces to the code are offered as part of the standard distribution. As Perl runs on a wide variety of common computer platforms, ATOMS itself is a cross platform application. All text presented to the user can be internationalized - support for four languages is currently included in the package. Development of ATOMS is active - a FEFF interface, structure visualization, and additional crystallographic calculations are among the future developments.

Year:  2001        PMID: 11512764     DOI: 10.1107/s090904950001493x

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  22 in total

1.  Reactions of Rh2(CH3COO)4 with thiols and thiolates: a structural study.

Authors:  Alejandra Enriquez Garcia; Farideh Jalilehvand; Pantea Niksirat
Journal:  J Synchrotron Radiat       Date:  2019-02-13       Impact factor: 2.616

2.  A new heterobinuclear FeIIICuII complex with a single terminal FeIII-O(phenolate) bond. Relevance to purple acid phosphatases and nucleases.

Authors:  Mauricio Lanznaster; Ademir Neves; Adailton J Bortoluzzi; Veronika V E Aires; Bruno Szpoganicz; Hernán Terenzi; Patricia Cardoso Severino; Julie M Fuller; Simon C Drew; Lawrence R Gahan; Graeme R Hanson; Mark J Riley; Gerhard Schenk
Journal:  J Biol Inorg Chem       Date:  2005-04-21       Impact factor: 3.358

3.  FeoC from Klebsiella pneumoniae contains a [4Fe-4S] cluster.

Authors:  Kuang-Lung Hsueh; Liang-Kun Yu; Yung-Han Chen; Ya-Hsin Cheng; Yin-Cheng Hsieh; Shyue-chu Ke; Kuo-Wei Hung; Chun-Jung Chen; Tai-huang Huang
Journal:  J Bacteriol       Date:  2013-08-16       Impact factor: 3.490

4.  Cadmium(II) complex formation with selenourea and thiourea in solution: an XAS and 113Cd NMR study.

Authors:  Farideh Jalilehvand; Zahra Amini; Karnjit Parmar
Journal:  Inorg Chem       Date:  2012-09-27       Impact factor: 5.165

5.  Microwave Assisted Synthesis of Iron(III) Oxyhydroxides/Oxides Characterized Using Transmission Electron Microscopy, X-ray Diffraction, and X-ray Absorption Spectroscopy.

Authors:  J G Parsons; C Luna; C E Botez; J Elizalde; J L Gardea-Torresdey
Journal:  J Phys Chem Solids       Date:  2009-03-01       Impact factor: 3.995

6.  Synthesis of plant-mediated gold nanoparticles and catalytic role of biomatrix-embedded nanomaterials.

Authors:  Nilesh C Sharma; Shivendra V Sahi; Sudip Nath; Jason G Parsons; Jorge L Gardea-Torresdey; Tarasankar Pal
Journal:  Environ Sci Technol       Date:  2007-07-15       Impact factor: 9.028

7.  Speciation and uptake of arsenic accumulated by corn seedlings using XAS and DRC-ICP-MS.

Authors:  J G Parsons; A Martinez-Martinez; J R Peralta-Videa; J L Gardea-Torresdey
Journal:  Chemosphere       Date:  2007-10-24       Impact factor: 7.086

8.  Uptake of nickel by synthetic mackinawite.

Authors:  Richard T Wilkin; Douglas G Beak
Journal:  Chem Geol       Date:  2017-06-25       Impact factor: 4.015

9.  Cadmium(II) complex formation with cysteine and penicillamine.

Authors:  Farideh Jalilehvand; Bonnie O Leung; Vicky Mah
Journal:  Inorg Chem       Date:  2009-07-06       Impact factor: 5.165

10.  Strongly correlated perovskite lithium ion shuttles.

Authors:  Yifei Sun; Michele Kotiuga; Dawgen Lim; Badri Narayanan; Mathew Cherukara; Zhen Zhang; Yongqi Dong; Ronghui Kou; Cheng-Jun Sun; Qiyang Lu; Iradwikanari Waluyo; Adrian Hunt; Hidekazu Tanaka; Azusa N Hattori; Sampath Gamage; Yohannes Abate; Vilas G Pol; Hua Zhou; Subramanian K R S Sankaranarayanan; Bilge Yildiz; Karin M Rabe; Shriram Ramanathan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-13       Impact factor: 11.205

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