Literature DB >> 11505383

Stoichiometric growth model for riboflavin-producing Bacillus subtilis.

M Dauner1, U Sauer.   

Abstract

Rate equations for measured extracellular rates and macromolecular composition data were combined with a stoichiometric model to describe riboflavin production with an industrial Bacillus subtilis strain using errors in variables regression analysis. On the basis of this combined stoichiometric growth model, we explored the topological features of the B. subtilis metabolic reaction network that was assembled from a large amount of literature. More specifically, we simulated maximum theoretical yields of biomass and riboflavin, including the associated flux regimes. Based on the developed model, the importance of experimental data on building block requirements for maximum yield and flux calculations were investigated. These analyses clearly show that verification of macromolecular composition data is important for optimum flux calculations. Copyright 2001 John Wiley & Sons, Inc.

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Year:  2001        PMID: 11505383     DOI: 10.1002/bit.1153

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  28 in total

1.  Intracellular carbon fluxes in riboflavin-producing Bacillus subtilis during growth on two-carbon substrate mixtures.

Authors:  Michael Dauner; Marco Sonderegger; Michel Hochuli; Thomas Szyperski; Kurt Wüthrich; Hans-Peter Hohmann; Uwe Sauer; James E Bailey
Journal:  Appl Environ Microbiol       Date:  2002-04       Impact factor: 4.792

2.  Experimental identification and quantification of glucose metabolism in seven bacterial species.

Authors:  Tobias Fuhrer; Eliane Fischer; Uwe Sauer
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

3.  Compiling a molecular inventory for Mycobacterium bovis BCG at two growth rates: evidence for growth rate-mediated regulation of ribosome biosynthesis and lipid metabolism.

Authors:  D J V Beste; J Peters; T Hooper; C Avignone-Rossa; M E Bushell; J McFadden
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

4.  Bacillus subtilis metabolism and energetics in carbon-limited and excess-carbon chemostat culture.

Authors:  M Dauner; T Storni; U Sauer
Journal:  J Bacteriol       Date:  2001-12       Impact factor: 3.490

5.  13C-flux analysis reveals NADPH-balancing transhydrogenation cycles in stationary phase of nitrogen-starving Bacillus subtilis.

Authors:  Martin Rühl; Dominique Le Coq; Stéphane Aymerich; Uwe Sauer
Journal:  J Biol Chem       Date:  2012-06-27       Impact factor: 5.157

6.  Complete genome sequence, metabolic model construction and phenotypic characterization of Geobacillus LC300, an extremely thermophilic, fast growing, xylose-utilizing bacterium.

Authors:  Lauren T Cordova; Christopher P Long; Keerthi P Venkataramanan; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2015-09-21       Impact factor: 9.783

7.  Metabolic flux responses to pyruvate kinase knockout in Escherichia coli.

Authors:  Marcel Emmerling; Michael Dauner; Aaron Ponti; Jocelyne Fiaux; Michel Hochuli; Thomas Szyperski; Kurt Wüthrich; J E Bailey; Uwe Sauer
Journal:  J Bacteriol       Date:  2002-01       Impact factor: 3.490

8.  Enhanced D-ribose biosynthesis in batch culture of a transketolase-deficient Bacillus subtilis strain by citrate.

Authors:  Lin Wu; Zhimin Li; Qin Ye
Journal:  J Ind Microbiol Biotechnol       Date:  2009-07-15       Impact factor: 3.346

9.  Different biochemical mechanisms ensure network-wide balancing of reducing equivalents in microbial metabolism.

Authors:  Tobias Fuhrer; Uwe Sauer
Journal:  J Bacteriol       Date:  2009-01-30       Impact factor: 3.490

10.  iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations.

Authors:  Christopher S Henry; Jenifer F Zinner; Matthew P Cohoon; Rick L Stevens
Journal:  Genome Biol       Date:  2009-06-25       Impact factor: 13.583

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