Literature DB >> 11504612

A novel superfamily of enzymes that catalyze the modification of guanidino groups.

H Shirai1, T L Blundell, K Mizuguchi.   

Abstract

Three enzymes, peptidyl-arginine deiminase from Porphyromonas gingivalis, arginine deiminase and amidinotransferase are traditionally classified separately. By combining PSI-BLAST and FUGUE, data presented in this article describe how these enzymes belong to a novel superfamily, adopting a common fold and sharing similar catalytic mechanisms.

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Year:  2001        PMID： 11504612     DOI： 10.1016/s0968-0004(01)01906-5

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


  38 in total

1.  Citrullination and proteolytic processing of chemokines by Porphyromonas gingivalis.

Authors:  Eva A V Moelants; Gitte Loozen; Anneleen Mortier; Erik Martens; Ghislain Opdenakker; Danuta Mizgalska; Borys Szmigielski; Jan Potempa; Jo Van Damme; Wim Teughels; Paul Proost
Journal:  Infect Immun       Date:  2014-03-31       Impact factor: 3.441

2.  Promiscuous partitioning of a covalent intermediate common in the pentein superfamily.

Authors:  Thomas W Linsky; Arthur F Monzingo; Everett M Stone; Jon D Robertus; Walter Fast
Journal:  Chem Biol       Date:  2008-05

Review 3.  Chemical biology of protein arginine modifications in epigenetic regulation.

Authors:  Jakob Fuhrmann; Kathleen W Clancy; Paul R Thompson
Journal:  Chem Rev       Date:  2015-05-13       Impact factor: 60.622

4.  Clawing through evolution: toxin diversification and convergence in the ancient lineage Chilopoda (centipedes).

Authors:  Eivind A B Undheim; Alun Jones; Karl R Clauser; John W Holland; Sandy S Pineda; Glenn F King; Bryan G Fry
Journal:  Mol Biol Evol       Date:  2014-05-20       Impact factor: 16.240

Review 5.  Arginine dependence of tumor cells: targeting a chink in cancer's armor.

Authors:  M D Patil; J Bhaumik; S Babykutty; U C Banerjee; D Fukumura
Journal:  Oncogene       Date:  2016-04-25       Impact factor: 9.867

6.  Crystal structures and biochemical analyses of the bacterial arginine dihydrolase ArgZ suggests a "bond rotation" catalytic mechanism.

Authors:  Ningning Zhuang; Hao Zhang; Lingting Li; Xiaoxian Wu; Chen Yang; Yu Zhang
Journal:  J Biol Chem       Date:  2019-12-30       Impact factor: 5.157

7.  Discovery of an operon that participates in agmatine metabolism and regulates biofilm formation in Pseudomonas aeruginosa.

Authors:  Bryan J Williams; Rui-Hong Du; M Wade Calcutt; Rasul Abdolrasulnia; Brian W Christman; Timothy S Blackwell
Journal:  Mol Microbiol       Date:  2010-02-10       Impact factor: 3.501

8.  Born-Oppenheimer ab initio QM/MM molecular dynamics simulations of the hydrolysis reaction catalyzed by protein arginine deiminase 4.

Authors:  Zhihong Ke; Shenglong Wang; Daiqian Xie; Yingkai Zhang
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

9.  Expression of arginine deiminase from Pseudomonas plecoglossicida CGMCC2039 in Escherichia coli and its anti-tumor activity.

Authors:  Ye Ni; Zhenwei Li; Zhihao Sun; Pu Zheng; Yongmei Liu; Leilei Zhu; Ulrich Schwaneberg
Journal:  Curr Microbiol       Date:  2009-03-12       Impact factor: 2.188

10.  Protein arginine deiminase 4: evidence for a reverse protonation mechanism.

Authors:  Bryan Knuckley; Monica Bhatia; Paul R Thompson
Journal:  Biochemistry       Date:  2007-05-12       Impact factor: 3.162
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