Literature DB >> 11500470

Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics.

P R Jungblut1, E C Müller, J Mattow, S H Kaufmann.   

Abstract

Genomics revealed the sequence of 3924 genes of the H37Rv strain of Mycobacterium tuberculosis. Proteomics complements genomics in showing which genes are really expressed, and here we show the expression of six genes not predicted by genomics, as proved by two-dimensional electrophoresis and matrix-assisted laser desorption ionization and nano-electrospray mass spectrometry.

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Year:  2001        PMID： 11500470      PMCID： PMC98710          DOI： 10.1128/IAI.69.9.5905-5907.2001

Source DB:  PubMed          Journal:  Infect Immun        ISSN： 0019-9567            Impact factor:   3.441


  11 in total

1.  A dynamic two-dimensional polyacrylamide gel electrophoresis database: the mycobacterial proteome via Internet.

Authors:  H J Mollenkopf; P R Jungblut; B Raupach; J Mattow; S Lamer; U Zimny-Arndt; U E Schaible; S H Kaufmann
Journal:  Electrophoresis       Date:  1999-08       Impact factor: 3.535

2.  Matrix-assisted laser desorption-ionization mass spectrometry peptide mass fingerprinting for proteome analysis: identification efficiency after on-blot or in-gel digestion with and without desalting procedures.

Authors:  S Lamer; P R Jungblut
Journal:  J Chromatogr B Biomed Sci Appl       Date:  2001-03-10

3.  Is the development of a new tuberculosis vaccine possible?

Authors:  S H Kaufmann
Journal:  Nat Med       Date:  2000-09       Impact factor: 53.440

4.  Identification of acidic, low molecular mass proteins of Mycobacterium tuberculosis strain H37Rv by matrix-assisted laser desorption/ionization and electrospray ionization mass spectrometry.

Authors:  J Mattow; P R Jungblut; E C Müller; S H Kaufmann
Journal:  Proteomics       Date:  2001-04       Impact factor: 3.984

5.  Error-tolerant identification of peptides in sequence databases by peptide sequence tags.

Authors:  M Mann; M Wilm
Journal:  Anal Chem       Date:  1994-12-15       Impact factor: 6.986

6.  Analysis of changes in acute-phase plasma proteins in an acute inflammatory response and in rheumatoid arthritis using two-dimensional gel electrophoresis.

Authors:  N S Doherty; B H Littman; K Reilly; A C Swindell; J M Buss; N L Anderson
Journal:  Electrophoresis       Date:  1998-02       Impact factor: 3.535

7.  Comparative proteome analysis of Mycobacterium tuberculosis and Mycobacterium bovis BCG strains: towards functional genomics of microbial pathogens.

Authors:  P R Jungblut; U E Schaible; H J Mollenkopf; U Zimny-Arndt; B Raupach; J Mattow; P Halada; S Lamer; K Hagens; S H Kaufmann
Journal:  Mol Microbiol       Date:  1999-09       Impact factor: 3.501

8.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal:  Science       Date:  1995-07-28       Impact factor: 47.728

9.  Peptide mass fingerprint sequence coverage from differently stained proteins on two-dimensional electrophoresis patterns by matrix assisted laser desorption/ionization-mass spectrometry (MALDI-MS).

Authors:  C Scheler; S Lamer; Z Pan; X P Li; J Salnikow; P Jungblut
Journal:  Electrophoresis       Date:  1998-05       Impact factor: 3.535

10.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962
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  29 in total

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Authors:  Sandra Kraljevic; Peter J Stambrook; Kresimir Pavelic
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Review 2.  Generating and navigating proteome maps using mass spectrometry.

Authors:  Christian H Ahrens; Erich Brunner; Ermir Qeli; Konrad Basler; Ruedi Aebersold
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3.  Defining genes in the genome of the hyperthermophilic archaeon Pyrococcus furiosus: implications for all microbial genomes.

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Journal:  J Bacteriol       Date:  2005-11       Impact factor: 3.490

Review 4.  Methods, Tools and Current Perspectives in Proteogenomics.

Authors:  Kelly V Ruggles; Karsten Krug; Xiaojing Wang; Karl R Clauser; Jing Wang; Samuel H Payne; David Fenyö; Bing Zhang; D R Mani
Journal:  Mol Cell Proteomics       Date:  2017-04-29       Impact factor: 5.911

5.  Proteomics in Vaccinology and Immunobiology: An Informatics Perspective of the Immunone.

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6.  Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias.

Authors:  Rong Wang; John T Prince; Edward M Marcotte
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7.  Analysis of the secretome and identification of novel constituents from culture filtrate of bacillus Calmette-Guerin using high-resolution mass spectrometry.

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8.  Experimental determination of translational starts using peptide mass mapping and tandem mass spectrometry within the proteome of Mycobacterium tuberculosis.

Authors:  Stuart C G Rison; Jens Mattow; Peter R Jungblut; Neil G Stoker
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9.  Definition of novel cell envelope associated proteins in Triton X-114 extracts of Mycobacterium tuberculosis H37Rv.

Authors:  Hiwa Målen; Sharad Pathak; Tina Søfteland; Gustavo A de Souza; Harald G Wiker
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10.  Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.

Authors:  Mathieu Baudet; Philippe Ortet; Jean-Charles Gaillard; Bernard Fernandez; Philippe Guérin; Christine Enjalbal; Gilles Subra; Arjan de Groot; Mohamed Barakat; Alain Dedieu; Jean Armengaud
Journal:  Mol Cell Proteomics       Date:  2009-10-29       Impact factor: 5.911
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