Literature DB >> 11494771

A compression algorithm for DNA sequences.

C Xin1, K Sam, L Ming.   

Abstract

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Year:  2001        PMID： 11494771     DOI： 10.1109/51.940049

Source DB:  PubMed          Journal:  IEEE Eng Med Biol Mag        ISSN： 0739-5175


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  12 in total

1.  Differential direct coding: a compression algorithm for nucleotide sequence data.

Authors:  Gregory Vey
Journal:  Database (Oxford)       Date:  2009-09-14       Impact factor: 3.451

2.  An Adaptive Difference Distribution-based Coding with Hierarchical Tree Structure for DNA Sequence Compression.

Authors:  Wenrui Dai; Hongkai Xiong; Xiaoqian Jiang; Lucila Ohno-Machado
Journal:  Proc Data Compress Conf       Date:  2013-03-22

3.  On the representability of complete genomes by multiple competing finite-context (Markov) models.

Authors:  Armando J Pinho; Paulo J S G Ferreira; António J R Neves; Carlos A C Bastos
Journal:  PLoS One       Date:  2011-06-30       Impact factor: 3.240

4.  GReEn: a tool for efficient compression of genome resequencing data.

Authors:  Armando J Pinho; Diogo Pratas; Sara P Garcia
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

5.  Streamlined Genome Sequence Compression using Distributed Source Coding.

Authors:  Shuang Wang; Xiaoqian Jiang; Feng Chen; Lijuan Cui; Samuel Cheng
Journal:  Cancer Inform       Date:  2014-12-02

6.  Alignment-free analysis of barcode sequences by means of compression-based methods.

Authors:  Massimo La Rosa; Antonino Fiannaca; Riccardo Rizzo; Alfonso Urso
Journal:  BMC Bioinformatics       Date:  2013-04-22       Impact factor: 3.169

7.  Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.

Authors:  Paolo Ferragina; Raffaele Giancarlo; Valentina Greco; Giovanni Manzini; Gabriel Valiente
Journal:  BMC Bioinformatics       Date:  2007-07-13       Impact factor: 3.169

8.  Cross chromosomal similarity for DNA sequence compression.

Authors:  Choi-Ping Paula Wu; Ngai-Fong Law; Wan-Chi Siu
Journal:  Bioinformation       Date:  2008-07-14

9.  Compressing DNA sequence databases with coil.

Authors:  W Timothy J White; Michael D Hendy
Journal:  BMC Bioinformatics       Date:  2008-05-20       Impact factor: 3.169

10.  DNA-COMPACT: DNA COMpression based on a pattern-aware contextual modeling technique.

Authors:  Pinghao Li; Shuang Wang; Jihoon Kim; Hongkai Xiong; Lucila Ohno-Machado; Xiaoqian Jiang
Journal:  PLoS One       Date:  2013-11-25       Impact factor: 3.240
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